Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99511094..99513536-chr2:99513971..99515914,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10172158	0.98[ASN][1000 genomes]
rs11123755	0.98[ASN][1000 genomes]
rs12468024	0.96[ASN][1000 genomes]
rs12474283	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs12712033	0.84[JPT][hapmap]
rs12712035	0.83[JPT][hapmap]
rs12712038	0.96[ASN][1000 genomes]
rs13004700	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs13005124	0.81[CHB][hapmap]
rs13028500	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs1581251	0.96[ASN][1000 genomes]
rs1983352	0.84[JPT][hapmap]
rs4263159	0.84[JPT][hapmap]
rs4851167	0.95[ASN][1000 genomes]
rs4851170	0.98[ASN][1000 genomes]
rs4851171	0.98[ASN][1000 genomes]
rs6542838	0.84[JPT][hapmap]
rs6714243	0.96[ASN][1000 genomes]
rs6717372	0.98[ASN][1000 genomes]
rs7579189	0.84[JPT][hapmap]
rs7608889	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs925887	0.82[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs981601	0.84[JPT][hapmap]
rs981602	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv582518	chr2:99498774-99546355	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99500000-99517000	Weak transcription	Gastric	stomach
2	chr2:99511200-99520400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:99511400-99513400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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