Variant report

Variant	rs10179153
Chromosome Location	chr2:179277780-179277781
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:179277625-179277958	GM12878	blood:	n/a	n/a
2	TBP	chr2:179277773-179278040	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr2:179277640-179280115	GM12891	blood:	n/a	n/a
4	POLR2A	chr2:179277690-179279851	GM12878	blood:	n/a	n/a
5	POLR2A	chr2:179277651-179280091	GM12878	blood:	n/a	n/a
6	TBP	chr2:179277710-179277795	GM12878	blood:	n/a	n/a
7	POLR2A	chr2:179277780-179279867	GM19099	blood:	n/a	n/a
8	MXI1	chr2:179277602-179280107	SK-N-SH	brain:	n/a	n/a
9	KAP1	chr2:179277734-179280044	HEK293	kidney:	n/a	chr2:179279500-179279508
10	ZNF263	chr2:179277632-179279871	HEK293-T-REx	kidney:	n/a	chr2:179278256-179278277

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:178974133..178981122-chr2:179276785..179281060,9	K562	blood:
2	chr2:179276440..179278357-chr2:179314496..179316084,2	MCF-7	breast:
3	chr2:179156403..179158773-chr2:179276903..179278454,2	K562	blood:
4	chr2:179277034..179278552-chr2:179314324..179316959,2	K562	blood:
5	chr2:179276988..179281129-chr2:179311895..179317764,7	MCF-7	breast:
6	chr2:179277180..179281325-chr2:179314213..179317479,5	K562	blood:
7	chr2:179277322..179281063-chr2:179341771..179345640,5	K562	blood:
8	chr2:179274878..179278568-chr2:179284211..179288261,3	K562	blood:
9	chr2:178974707..178979925-chr2:179277151..179280371,6	K562	blood:
10	chr2:179264734..179266660-chr2:179277060..179279815,2	MCF-7	breast:
11	chr2:179269516..179271949-chr2:179276135..179277848,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223960	TF binding region
ENSG00000155636	Chromatin interaction
ENSG00000116095	Chromatin interaction
ENSG00000204311	Chromatin interaction
ENSG00000260931	Chromatin interaction
ENSG00000180228	Chromatin interaction
ENSG00000079150	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10207436	0.97[ASN][1000 genomes]
rs10930831	0.80[ASN][1000 genomes]
rs13411588	0.96[ASN][1000 genomes]
rs1434085	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2114582	0.98[ASN][1000 genomes]
rs2366603	0.96[ASN][1000 genomes]
rs2366604	0.96[ASN][1000 genomes]
rs2886712	0.81[ASN][1000 genomes]
rs3752689	0.81[ASN][1000 genomes]
rs4894017	0.98[ASN][1000 genomes]
rs4894018	0.96[ASN][1000 genomes]
rs4894019	0.96[ASN][1000 genomes]
rs4894020	0.96[ASN][1000 genomes]
rs6720559	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6739142	0.88[ASN][1000 genomes]
rs7589679	0.98[ASN][1000 genomes]
rs9288019	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv834467	chr2:179258140-179430965	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179270000-179277800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:179270000-179277800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr2:179270600-179277800	Weak transcription	HSMM	muscle
4	chr2:179271000-179277800	Weak transcription	HSMMtube	muscle
5	chr2:179272200-179278000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:179277000-179277800	Enhancers	A549	lung
7	chr2:179277000-179278000	Enhancers	K562	blood
8	chr2:179277200-179277800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:179277200-179278000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:179277200-179278000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:179277200-179278000	Weak transcription	Fetal Intestine Small	intestine
12	chr2:179277400-179277800	Enhancers	Primary hematopoietic stem cells	blood
13	chr2:179277400-179277800	Enhancers	Stomach Smooth Muscle	stomach
14	chr2:179277400-179278200	Weak transcription	Fetal Heart	heart
15	chr2:179277600-179277800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:179277600-179277800	Enhancers	Primary T cells from cord blood	blood
17	chr2:179277600-179277800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr2:179277600-179277800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr2:179277600-179277800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr2:179277600-179277800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr2:179277600-179277800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr2:179277600-179277800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:179277600-179277800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:179277600-179277800	Enhancers	Adipose Nuclei	Adipose
25	chr2:179277600-179277800	Weak transcription	Fetal Intestine Large	intestine
26	chr2:179277600-179277800	Flanking Active TSS	GM12878-XiMat	blood
27	chr2:179277600-179277800	Enhancers	HUVEC	blood vessel
28	chr2:179277600-179277800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr2:179277600-179278000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:179277600-179278000	Flanking Active TSS	Hela-S3	cervix
31	chr2:179277600-179278200	Flanking Active TSS	Dnd41	blood
32	chr2:179277600-179278800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:179277600-179279600	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr2:179277600-179279600	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr2:179277600-179279600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr2:179277600-179279600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr2:179277600-179279600	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr2:179277600-179279600	Active TSS	Right Atrium	heart
39	chr2:179277600-179280000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr2:179277600-179280000	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr2:179277600-179280200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:179277600-179280400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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