Variant report

Variant	rs10180986
Chromosome Location	chr2:40578171-40578172
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4140917	1.00[JPT][hapmap]
rs41428649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs62150836	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv34071	chr2:40435231-40578229	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1010508	chr2:40526981-40590777	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv535655	chr2:40526981-40590777	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2757794	chr2:40547947-40733776	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2759044	chr2:40547947-40733776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv873914	chr2:40573350-40586022	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv873915	chr2:40573350-40615520	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv516330	chr2:40576347-40579948	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40543200-40578800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:40552800-40590600	Weak transcription	Fetal Kidney	kidney
3	chr2:40560200-40579000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:40571600-40582600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:40574000-40579600	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:40574600-40579400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:40574600-40579600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:40574600-40580000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr2:40574600-40580000	Weak transcription	Left Ventricle	heart
10	chr2:40574600-40586000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:40574600-40590600	Weak transcription	Aorta	Aorta
12	chr2:40574800-40579600	Weak transcription	Dnd41	blood
13	chr2:40576000-40578400	Weak transcription	Hela-S3	cervix
14	chr2:40576000-40579800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:40576000-40579800	Weak transcription	Adipose Nuclei	Adipose
16	chr2:40576200-40578800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr2:40576400-40578800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:40576400-40579800	Weak transcription	Right Ventricle	heart
19	chr2:40576600-40578800	Weak transcription	HSMMtube	muscle
20	chr2:40576600-40579200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:40576800-40578400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr2:40576800-40578400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:40576800-40578400	Weak transcription	NHDF-Ad	bronchial
24	chr2:40576800-40578600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:40576800-40578600	Weak transcription	Fetal Heart	heart
26	chr2:40576800-40578600	Weak transcription	Osteobl	bone
27	chr2:40576800-40578800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:40576800-40578800	Weak transcription	HMEC	breast
29	chr2:40576800-40579200	Weak transcription	NHLF	lung
30	chr2:40576800-40579800	Weak transcription	Right Atrium	heart
31	chr2:40576800-40587600	Weak transcription	NH-A	brain
32	chr2:40577600-40578200	Weak transcription	HSMM	muscle
33	chr2:40577600-40578400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr2:40577600-40579800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links