Variant report

Variant	rs10182004
Chromosome Location	chr2:36934887-36934888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36928366..36930832-chr2:36932347..36935302,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10490667	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs12472756	0.86[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap]
rs12619567	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs17019511	0.86[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv873878	chr2:36908661-36942266	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36929000-36938600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36931400-36935400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr2:36931600-36936000	Enhancers	Fetal Muscle Leg	muscle
4	chr2:36931800-36937200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:36931800-36937200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:36932000-36936200	Enhancers	NHEK	skin
7	chr2:36932200-36935600	Enhancers	Fetal Stomach	stomach
8	chr2:36932800-36935200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:36932800-36936200	Enhancers	NHLF	lung
10	chr2:36933200-36936000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr2:36933200-36936000	Enhancers	HSMM	muscle
12	chr2:36934000-36935400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:36934000-36935400	Enhancers	Fetal Muscle Trunk	muscle
14	chr2:36934000-36935600	Enhancers	NH-A	brain
15	chr2:36934000-36935800	Enhancers	Adipose Nuclei	Adipose
16	chr2:36934000-36936000	Enhancers	Placenta	Placenta
17	chr2:36934200-36936400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:36934400-36935000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:36934400-36935400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:36934400-36935400	Enhancers	Right Atrium	heart
21	chr2:36934400-36935600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr2:36934600-36935600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:36934600-36936000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:36934600-36936000	Enhancers	HSMMtube	muscle
25	chr2:36934800-36935000	Weak transcription	Lung	lung
26	chr2:36934800-36935200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:36934800-36935200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr2:36934800-36935200	Weak transcription	HMEC	breast
29	chr2:36934800-36935200	Flanking Active TSS	NHDF-Ad	bronchial
30	chr2:36934800-36935200	Enhancers	Osteobl	bone
31	chr2:36934800-36935800	Weak transcription	Hela-S3	cervix
32	chr2:36934800-36936000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:36934800-36939000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr2:36934800-36951400	Weak transcription	Ovary	ovary

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