Variant report

Variant	rs1018289
Chromosome Location	chr4:128548847-128548848
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:128542891..128546821-chr4:128547313..128550133,5	K562	blood:
2	chr4:128544174..128546821-chr4:128547877..128550133,3	K562	blood:
3	chr4:128547130..128549718-chr4:128550417..128553383,2	K562	blood:

Variant related genes	Relation type
ENSG00000164066	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11098931	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11098933	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11098936	0.82[CHB][hapmap]
rs11728750	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11732886	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12509562	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12511932	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12649427	0.95[ASN][1000 genomes]
rs12650360	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13126673	0.85[CEU][hapmap]
rs13151291	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1399210	0.85[EUR][1000 genomes]
rs1399211	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459049	0.81[CEU][hapmap]
rs1459051	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1514298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1514299	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1585312	0.83[CHB][hapmap]
rs1870422	0.82[CHB][hapmap]
rs1913464	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048685	0.86[EUR][1000 genomes]
rs2048686	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2125573	0.85[CEU][hapmap]
rs2255457	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2305958	0.82[CHB][hapmap]
rs2391188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28656192	0.83[EUR][1000 genomes]
rs34240473	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs36179490	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3749507	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs3775982	0.82[CHB][hapmap]
rs4435753	0.82[CHB][hapmap]
rs4543128	0.85[CEU][hapmap]
rs4833383	0.85[CEU][hapmap]
rs4834206	0.85[EUR][1000 genomes]
rs4834209	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4834210	0.81[CEU][hapmap]
rs4834211	0.85[CEU][hapmap]
rs59255549	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62334037	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6534630	0.86[EUR][1000 genomes]
rs6534631	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6534632	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs6534633	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6534634	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6534637	0.85[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs6810904	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6823957	0.91[ASN][1000 genomes]
rs6828511	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6847056	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs6847397	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6858855	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7654638	0.82[CHB][hapmap]
rs7664217	0.86[EUR][1000 genomes]
rs7671590	0.83[CHB][hapmap]
rs7683627	0.92[CEU][hapmap]
rs7684368	0.83[CHB][hapmap]
rs7686395	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7692114	0.89[CEU][hapmap]
rs922060	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9995738	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1029214	chr4:128292215-128683123	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537247	chr4:128292215-128683123	Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817326	chr4:128292216-128915201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv879916	chr4:128422400-128694288	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv879917	chr4:128478408-128841252	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	esv1800085	chr4:128502675-128557864	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv830056	chr4:128517139-128676557	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv879918	chr4:128543742-128694288	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv879919	chr4:128543742-128697519	Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128545000-128550600	Weak transcription	Esophagus	oesophagus
2	chr4:128545200-128552400	Weak transcription	Psoas Muscle	Psoas
3	chr4:128545600-128553400	Weak transcription	Fetal Brain Male	brain
4	chr4:128547000-128549000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:128548200-128552400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:128548200-128553200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:128548200-128553400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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