Variant report

Variant	rs10183118
Chromosome Location	chr2:86198433-86198434
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10186005	0.84[EUR][1000 genomes]
rs11890514	0.82[EUR][1000 genomes]
rs11891625	0.84[EUR][1000 genomes]
rs12470643	0.84[EUR][1000 genomes]
rs12472588	0.82[EUR][1000 genomes]
rs12476390	0.82[EUR][1000 genomes]
rs13000793	0.84[EUR][1000 genomes]
rs1438153	0.81[EUR][1000 genomes]
rs1438155	0.84[EUR][1000 genomes]
rs1561330	0.81[ASN][1000 genomes]
rs1866242	0.84[EUR][1000 genomes]
rs4514874	0.84[EUR][1000 genomes]
rs6547651	0.82[EUR][1000 genomes]
rs6708525	0.84[EUR][1000 genomes]
rs6737454	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10183118	IMMT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86198200-86202800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:86198400-86198800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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