Variant report

Variant	rs10183259
Chromosome Location	chr2:56671937-56671938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10165672	1.00[EUR][1000 genomes]
rs10165892	1.00[EUR][1000 genomes]
rs10166050	1.00[EUR][1000 genomes]
rs10176983	1.00[EUR][1000 genomes]
rs10180194	1.00[EUR][1000 genomes]
rs10181815	1.00[EUR][1000 genomes]
rs10193624	1.00[EUR][1000 genomes]
rs10193747	1.00[EUR][1000 genomes]
rs10198440	1.00[EUR][1000 genomes]
rs10202374	1.00[EUR][1000 genomes]
rs11887424	1.00[EUR][1000 genomes]
rs11896577	1.00[EUR][1000 genomes]
rs11897129	1.00[EUR][1000 genomes]
rs13384989	1.00[EUR][1000 genomes]
rs13386727	1.00[EUR][1000 genomes]
rs13387143	1.00[EUR][1000 genomes]
rs13396144	1.00[EUR][1000 genomes]
rs13398609	1.00[EUR][1000 genomes]
rs13401849	1.00[EUR][1000 genomes]
rs13407738	1.00[EUR][1000 genomes]
rs13408350	1.00[EUR][1000 genomes]
rs13411174	1.00[EUR][1000 genomes]
rs13412157	1.00[EUR][1000 genomes]
rs13417902	1.00[EUR][1000 genomes]
rs13421608	1.00[EUR][1000 genomes]
rs13431398	1.00[EUR][1000 genomes]
rs17047938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17047945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048166	1.00[EUR][1000 genomes]
rs17048167	1.00[EUR][1000 genomes]
rs17048189	1.00[EUR][1000 genomes]
rs17048223	1.00[EUR][1000 genomes]
rs2081427	1.00[EUR][1000 genomes]
rs2193483	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2194793	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2216493	1.00[EUR][1000 genomes]
rs28530709	0.89[AMR][1000 genomes]
rs28654487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28678883	1.00[EUR][1000 genomes]
rs55923854	1.00[EUR][1000 genomes]
rs59956872	1.00[EUR][1000 genomes]
rs6741874	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940723	1.00[EUR][1000 genomes]
rs73940724	1.00[EUR][1000 genomes]
rs73940726	1.00[EUR][1000 genomes]
rs7556872	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7559732	1.00[EUR][1000 genomes]
rs7570781	1.00[EUR][1000 genomes]
rs7586424	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv522944	chr2:56603985-56676997	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874172	chr2:56638856-56811749	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2757800	chr2:56659685-56851198	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2759052	chr2:56659685-56851198	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56670800-56673200	Enhancers	Fetal Intestine Large	intestine
2	chr2:56671400-56672000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:56671400-56672000	Enhancers	Fetal Heart	heart
4	chr2:56671400-56672200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:56671600-56672000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:56671600-56672000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:56671600-56672000	Enhancers	Fetal Muscle Leg	muscle
8	chr2:56671600-56672000	Enhancers	Left Ventricle	heart
9	chr2:56671600-56672000	Enhancers	Right Atrium	heart
10	chr2:56671600-56672000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr2:56671600-56672000	Enhancers	HSMM	muscle
12	chr2:56671600-56672200	Enhancers	Gastric	stomach
13	chr2:56671600-56672200	Enhancers	Psoas Muscle	Psoas
14	chr2:56671600-56672200	Enhancers	Stomach Mucosa	stomach
15	chr2:56671600-56673000	Enhancers	Fetal Intestine Small	intestine
16	chr2:56671800-56672200	Flanking Active TSS	Duodenum Mucosa	Duodenum

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