Variant report

Variant	rs10184255
Chromosome Location	chr2:53036265-53036266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10164801	0.85[EUR][1000 genomes]
rs10164868	0.84[EUR][1000 genomes]
rs10167421	0.85[EUR][1000 genomes]
rs10168840	0.82[EUR][1000 genomes]
rs10179810	0.85[EUR][1000 genomes]
rs10206560	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10865272	0.84[EUR][1000 genomes]
rs12475542	0.83[EUR][1000 genomes]
rs12477231	0.87[EUR][1000 genomes]
rs12614959	0.86[EUR][1000 genomes]
rs12617374	0.81[EUR][1000 genomes]
rs12617738	0.84[EUR][1000 genomes]
rs12618983	0.87[EUR][1000 genomes]
rs12713227	0.81[EUR][1000 genomes]
rs12713228	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12713229	0.81[EUR][1000 genomes]
rs12713230	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12713232	0.85[EUR][1000 genomes]
rs12713233	0.86[EUR][1000 genomes]
rs12990843	0.85[EUR][1000 genomes]
rs13002328	0.88[EUR][1000 genomes]
rs13003962	0.86[EUR][1000 genomes]
rs13030509	0.83[EUR][1000 genomes]
rs13423867	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1376567	0.83[EUR][1000 genomes]
rs1376569	0.88[EUR][1000 genomes]
rs1376570	0.82[EUR][1000 genomes]
rs1451455	0.84[EUR][1000 genomes]
rs1451456	0.87[EUR][1000 genomes]
rs1451458	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1451460	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1597653	0.85[EUR][1000 genomes]
rs17504530	0.81[EUR][1000 genomes]
rs1828338	0.80[EUR][1000 genomes]
rs1839770	0.82[EUR][1000 genomes]
rs1839771	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1864534	0.82[EUR][1000 genomes]
rs2356680	0.85[EUR][1000 genomes]
rs2356681	0.85[EUR][1000 genomes]
rs4143203	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4525730	0.86[EUR][1000 genomes]
rs6545310	0.85[EUR][1000 genomes]
rs6715847	0.80[EUR][1000 genomes]
rs6715857	0.86[EUR][1000 genomes]
rs6725912	0.86[EUR][1000 genomes]
rs6737483	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6746666	0.81[EUR][1000 genomes]
rs6754205	0.83[EUR][1000 genomes]
rs6754423	0.86[EUR][1000 genomes]
rs67939368	0.86[EUR][1000 genomes]
rs724859	0.85[EUR][1000 genomes]
rs724860	0.86[EUR][1000 genomes]
rs74181216	0.83[EUR][1000 genomes]
rs7577692	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834047	chr2:52874257-53056239	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998380	chr2:52891706-53222155	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2763631	chr2:52910862-53169629	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv874135	chr2:52937317-53061834	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv431058	chr2:52944395-53057924	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1006244	chr2:52958322-53169617	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1005813	chr2:52959769-53114865	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1010978	chr2:52959769-53249951	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1014068	chr2:52960353-53169617	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv524806	chr2:53013320-53052480	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv581976	chr2:53013320-53056546	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv1011670	chr2:53013320-53058194	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv581977	chr2:53023825-53056546	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53027800-53049000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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