Variant report

Variant	rs10185589
Chromosome Location	chr2:144587571-144587572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10209234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496953	0.91[EUR][1000 genomes]
rs10803499	0.90[EUR][1000 genomes]
rs10928198	0.90[EUR][1000 genomes]
rs10928199	0.89[EUR][1000 genomes]
rs10928200	0.90[EUR][1000 genomes]
rs11680552	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs11680647	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs11690817	0.90[EUR][1000 genomes]
rs11885154	0.81[EUR][1000 genomes]
rs11900371	0.81[EUR][1000 genomes]
rs12232953	0.90[EUR][1000 genomes]
rs12232960	0.90[EUR][1000 genomes]
rs12233246	0.87[EUR][1000 genomes]
rs12472619	0.90[EUR][1000 genomes]
rs12619865	0.84[ASN][1000 genomes]
rs12987263	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12988543	0.81[EUR][1000 genomes]
rs12989339	0.91[EUR][1000 genomes]
rs12990566	0.90[EUR][1000 genomes]
rs13004608	0.90[EUR][1000 genomes]
rs13005273	0.90[EUR][1000 genomes]
rs13018432	0.90[EUR][1000 genomes]
rs13024385	0.90[EUR][1000 genomes]
rs13030406	0.90[EUR][1000 genomes]
rs13031917	0.89[EUR][1000 genomes]
rs1316848	0.88[EUR][1000 genomes]
rs16823114	0.90[EUR][1000 genomes]
rs16823140	0.89[EUR][1000 genomes]
rs16823141	0.90[EUR][1000 genomes]
rs16823143	0.90[EUR][1000 genomes]
rs1882624	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1922686	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1922687	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1986534	0.90[EUR][1000 genomes]
rs1986535	0.90[EUR][1000 genomes]
rs2178735	0.96[ASN][1000 genomes]
rs2204900	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2204901	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2381511	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2381550	0.90[EUR][1000 genomes]
rs2381551	0.89[EUR][1000 genomes]
rs2381552	0.90[EUR][1000 genomes]
rs2890738	0.95[CEU][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes]
rs34853426	0.81[EUR][1000 genomes]
rs4662354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6757162	0.89[EUR][1000 genomes]
rs7557770	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559309	0.90[EUR][1000 genomes]
rs7567164	0.90[EUR][1000 genomes]
rs7569425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7604485	0.90[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144574800-144591000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:144582800-144590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:144584200-144589600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:144584400-144589200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:144587200-144587800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:144587400-144588000	Enhancers	Fetal Stomach	stomach

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