Variant report

Variant	rs10186159
Chromosome Location	chr2:74472186-74472187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74469729..74473630-chr2:74474200..74479203,5	MCF-7	breast:
2	chr2:74471987..74473627-chr2:74694857..74697691,2	K562	blood:
3	chr2:74424362..74427305-chr2:74471867..74475240,3	K562	blood:
4	chr2:74469853..74472729-chr2:74479366..74481244,2	MCF-7	breast:
5	chr2:74466425..74468633-chr2:74471671..74474388,2	K562	blood:

Variant related genes	Relation type
ENSG00000065911	Chromatin interaction
ENSG00000188687	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10175973	0.86[EUR][1000 genomes]
rs12053233	0.84[ASN][1000 genomes]
rs13002080	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13006863	0.94[ASN][1000 genomes]
rs4853018	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179526	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3427010	chr2:74351730-74813541	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
2	nsv834261	chr2:74391709-74613720	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3401140	chr2:74439333-74533696	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv3380034	chr2:74439354-74533666	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74427400-74484400	Weak transcription	Fetal Lung	lung
2	chr2:74427800-74494200	Weak transcription	Brain Germinal Matrix	brain
3	chr2:74439800-74525200	Weak transcription	Fetal Brain Male	brain
4	chr2:74441800-74490400	Weak transcription	Fetal Brain Female	brain
5	chr2:74442400-74477400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:74444800-74494200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:74448800-74494000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr2:74449200-74502200	Weak transcription	Spleen	Spleen
9	chr2:74449400-74494000	Weak transcription	Primary T cells from cord blood	blood
10	chr2:74449400-74507000	Weak transcription	Brain Anterior Caudate	brain
11	chr2:74450000-74494000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr2:74454200-74508200	Weak transcription	Ovary	ovary
13	chr2:74454400-74474200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:74455400-74473600	Weak transcription	Lung	lung
15	chr2:74455600-74480000	Weak transcription	Fetal Muscle Leg	muscle
16	chr2:74458600-74483400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:74458800-74488200	Weak transcription	Pancreas	Pancrea
18	chr2:74461800-74474000	Weak transcription	Fetal Stomach	stomach
19	chr2:74462200-74494000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr2:74462400-74493800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr2:74462600-74473600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:74462600-74509600	Weak transcription	Brain Substantia Nigra	brain
23	chr2:74462800-74473200	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:74462800-74473400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr2:74463000-74544800	Weak transcription	Brain Angular Gyrus	brain
26	chr2:74463400-74473000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr2:74466400-74492800	Weak transcription	Adipose Nuclei	Adipose
28	chr2:74469400-74485200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr2:74470400-74473600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:74470400-74527800	Weak transcription	Aorta	Aorta
31	chr2:74470400-74528000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr2:74470600-74481400	Weak transcription	Left Ventricle	heart
33	chr2:74470600-74511800	Weak transcription	Right Ventricle	heart
34	chr2:74470600-74518200	Weak transcription	Gastric	stomach
35	chr2:74472000-74473800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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