Variant report

Variant	rs10186415
Chromosome Location	chr2:234164492-234164493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:234163941..234166024-chr2:234172224..234174634,2	K562	blood:
2	chr2:234163205..234166188-chr2:234263952..234265730,2	MCF-7	breast:
3	chr2:234161754..234164546-chr2:234176635..234178201,2	K562	blood:
4	chr2:234161693..234166047-chr2:234167019..234170688,4	MCF-7	breast:
5	chr2:234162476..234164619-chr2:234172094..234174882,2	MCF-7	breast:
6	chr2:234160181..234161722-chr2:234164238..234166311,2	MCF-7	breast:
7	chr2:234161285..234164496-chr2:234179412..234182858,4	MCF-7	breast:
8	chr2:234163227..234166174-chr2:234179109..234182042,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000085978	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12472475	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12474375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432541	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1441090	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4663340	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4663346	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4663402	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4663420	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4663421	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57215884	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58040982	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73110037	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73110098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7587485	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234161400-234165200	Weak transcription	Ovary	ovary
2	chr2:234161400-234166800	Weak transcription	Esophagus	oesophagus
3	chr2:234161400-234170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:234161400-234170600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:234161400-234170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:234161600-234165000	Enhancers	Colon Smooth Muscle	Colon
7	chr2:234161600-234167600	Weak transcription	Stomach Mucosa	stomach
8	chr2:234161800-234164600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:234161800-234164600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr2:234161800-234166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:234161800-234166200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:234161800-234169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:234161800-234171800	Weak transcription	Fetal Kidney	kidney
14	chr2:234161800-234180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr2:234162000-234165000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
16	chr2:234162000-234165800	Weak transcription	Colonic Mucosa	Colon
17	chr2:234162200-234165000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:234162200-234165000	Weak transcription	Left Ventricle	heart
19	chr2:234162200-234167000	Weak transcription	Lung	lung
20	chr2:234162200-234205200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:234162200-234205200	Strong transcription	Fetal Muscle Trunk	muscle
22	chr2:234162400-234170000	Weak transcription	Fetal Brain Male	brain
23	chr2:234162400-234192000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:234162400-234196400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:234162400-234205200	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr2:234162400-234205400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:234162600-234164600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr2:234162600-234165000	Weak transcription	Primary B cells from cord blood	blood
29	chr2:234162600-234165000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr2:234162600-234176200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:234162600-234188600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr2:234162600-234192400	Strong transcription	Osteobl	bone
33	chr2:234162600-234205000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr2:234162600-234205200	Strong transcription	Fetal Muscle Leg	muscle
35	chr2:234162800-234164600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:234162800-234164800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr2:234162800-234165400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:234162800-234166800	Weak transcription	Aorta	Aorta
39	chr2:234162800-234167000	Weak transcription	Right Ventricle	heart
40	chr2:234162800-234167800	Weak transcription	Brain Hippocampus Middle	brain
41	chr2:234162800-234170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr2:234162800-234194000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:234162800-234197000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr2:234162800-234205600	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr2:234163000-234164600	Weak transcription	Hela-S3	cervix
46	chr2:234163000-234164600	Genic enhancers	HepG2	liver
47	chr2:234163000-234164600	Weak transcription	K562	blood
48	chr2:234163000-234164800	Weak transcription	Fetal Intestine Large	intestine
49	chr2:234163000-234165000	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr2:234163000-234165200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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