Variant report

Variant	rs10187181
Chromosome Location	chr2:123819567-123819568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10192812	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10201376	0.94[EUR][1000 genomes]
rs10203326	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10210632	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12373639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1399642	1.00[EUR][1000 genomes]
rs1399643	1.00[EUR][1000 genomes]
rs17009319	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009364	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2419072	1.00[EUR][1000 genomes]
rs2661033	1.00[EUR][1000 genomes]
rs2661037	1.00[EUR][1000 genomes]
rs2661038	1.00[EUR][1000 genomes]
rs2661039	1.00[EUR][1000 genomes]
rs2661040	1.00[EUR][1000 genomes]
rs2673186	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72964558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs908272	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492280	chr2:123447662-123973577	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2760647	chr2:123678437-124619697	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1010200	chr2:123816326-123887210	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:123818200-123821000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:123818600-123819600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:123818600-123819800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:123818800-123820200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:123819000-123819600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:123819200-123819600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:123819200-123821000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:123819400-123821400	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links