Variant report

Variant	rs10187264
Chromosome Location	chr2:53727267-53727268
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:53720586..53722714-chr2:53727046..53728819,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10175727	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10176112	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002734	1.00[ASN][1000 genomes]
rs13386161	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402902	1.00[ASN][1000 genomes]
rs1521940	1.00[ASN][1000 genomes]
rs1521943	1.00[ASN][1000 genomes]
rs17044942	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17044948	1.00[ASN][1000 genomes]
rs1874057	1.00[ASN][1000 genomes]
rs34583316	1.00[ASN][1000 genomes]
rs35129126	1.00[ASN][1000 genomes]
rs4671436	1.00[ASN][1000 genomes]
rs4672422	1.00[ASN][1000 genomes]
rs56148675	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726361	1.00[ASN][1000 genomes]
rs6735153	1.00[ASN][1000 genomes]
rs6739882	1.00[CHD][hapmap]
rs6740206	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746638	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73934923	1.00[ASN][1000 genomes]
rs741530	1.00[ASN][1000 genomes]
rs7570353	1.00[ASN][1000 genomes]
rs7583838	1.00[ASN][1000 genomes]
rs7585615	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv997401	chr2:53515629-53863347	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv999571	chr2:53690538-53775723	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1012754	chr2:53690538-53785037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv457873	chr2:53701324-53785037	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv582009	chr2:53701324-53785037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv457886	chr2:53722595-53835083	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv582010	chr2:53722595-53835083	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53718200-53737600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:53723200-53727600	Enhancers	Colon Smooth Muscle	Colon
3	chr2:53724000-53727600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:53724200-53727600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:53724600-53727600	Enhancers	Stomach Smooth Muscle	stomach
6	chr2:53725200-53727600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:53725600-53728000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:53725800-53729200	Enhancers	Pancreas	Pancrea
9	chr2:53726000-53727400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:53726000-53727400	Enhancers	Lung	lung
11	chr2:53726000-53728400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:53726400-53731400	Weak transcription	Hela-S3	cervix
13	chr2:53726400-53737000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr2:53726800-53727600	Enhancers	Aorta	Aorta
15	chr2:53726800-53727800	Enhancers	Fetal Lung	lung
16	chr2:53727200-53727400	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links