Variant report

Variant	rs10187562
Chromosome Location	chr2:168465306-168465307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10211225	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853982	1.00[AMR][1000 genomes]
rs16853990	1.00[AMR][1000 genomes]
rs16854002	1.00[AMR][1000 genomes]
rs16854039	1.00[AMR][1000 genomes]
rs6433003	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6758973	1.00[AMR][1000 genomes]
rs73015463	1.00[AMR][1000 genomes]
rs73015464	1.00[AMR][1000 genomes]
rs73015475	0.85[AMR][1000 genomes]
rs73015478	0.85[AMR][1000 genomes]
rs73015480	1.00[AMR][1000 genomes]
rs7564626	0.85[AMR][1000 genomes]
rs7578134	1.00[AMR][1000 genomes]
rs7590515	1.00[AMR][1000 genomes]
rs7602591	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv583594	chr2:168461161-168597986	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168464200-168476600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:168464600-168473600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:168464600-168474200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:168464800-168465400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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