The 2.0 version of rSNPBase
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Variant report
Variant
rs10187834
Chromosome Location
chr2:37390553-37390554
allele
G/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr2:37382848..37386165-chr2:37386168..37391618,9
MCF-7
breast:
2
chr2:37383824..37387146-chr2:37387589..37390750,4
K562
blood:
3
chr2:37383207..37386416-chr2:37387973..37392066,4
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000055332
Chromatin interaction
Extended variants information (count: 10 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:10)
rs_ID
r
2
[population]
rs12473749
0.88[EUR][1000 genomes]
rs13421814
0.88[EUR][1000 genomes]
rs13425169
0.83[EUR][1000 genomes]
rs2307479
0.83[EUR][1000 genomes]
rs4648182
0.83[EUR][1000 genomes]
rs4648184
0.83[EUR][1000 genomes]
rs4648185
0.83[EUR][1000 genomes]
rs4648197
0.83[EUR][1000 genomes]
rs4648203
0.83[EUR][1000 genomes]
rs4648204
0.83[EUR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links