Variant report

Variant	rs10188611
Chromosome Location	chr2:153376999-153377000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153376259..153378137-chr2:153378821..153381513,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10168793	0.84[ASN][1000 genomes]
rs10182254	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10209069	0.82[ASN][1000 genomes]
rs10211164	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10931154	0.81[ASN][1000 genomes]
rs11904088	0.90[ASN][1000 genomes]
rs12612608	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12613219	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12619679	0.90[ASN][1000 genomes]
rs12619706	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12622731	0.82[ASN][1000 genomes]
rs13404703	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13427485	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2346182	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2577182	0.82[ASN][1000 genomes]
rs4664592	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4664593	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7581544	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs893331	0.82[ASN][1000 genomes]
rs9288108	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1013777	chr2:153273637-153538546	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv834420	chr2:153339646-153535460	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153361000-153398600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:153362400-153379400	Weak transcription	Fetal Brain Male	brain
3	chr2:153365000-153377600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:153365400-153377200	Weak transcription	Small Intestine	intestine
5	chr2:153365600-153386000	Weak transcription	Fetal Stomach	stomach
6	chr2:153371000-153379200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:153373000-153380200	Weak transcription	Brain Germinal Matrix	brain
8	chr2:153373800-153377600	Enhancers	Fetal Intestine Small	intestine
9	chr2:153374400-153381200	Weak transcription	Gastric	stomach
10	chr2:153374600-153378400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:153374600-153385000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:153375000-153381600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr2:153375200-153377400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr2:153375400-153377200	Weak transcription	A549	lung
15	chr2:153375400-153377200	Weak transcription	HepG2	liver
16	chr2:153375400-153382200	Weak transcription	Fetal Kidney	kidney
17	chr2:153375600-153377800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr2:153375600-153385000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:153375800-153378000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:153375800-153379000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:153376000-153377400	Weak transcription	Stomach Mucosa	stomach
22	chr2:153376000-153377600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:153376000-153377800	Enhancers	Brain Hippocampus Middle	brain
24	chr2:153376000-153380800	Weak transcription	Aorta	Aorta
25	chr2:153376000-153380800	Weak transcription	Ovary	ovary
26	chr2:153376000-153381200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:153376000-153381400	Weak transcription	Lung	lung
28	chr2:153376000-153381400	Weak transcription	Psoas Muscle	Psoas
29	chr2:153376000-153381600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr2:153376000-153381600	Weak transcription	Fetal Lung	lung
31	chr2:153376000-153381600	Weak transcription	Right Atrium	heart
32	chr2:153376000-153381800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr2:153376000-153381800	Weak transcription	Pancreas	Pancrea
34	chr2:153376000-153382000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr2:153376000-153385200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:153376000-153388800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr2:153376200-153377400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr2:153376200-153378200	Weak transcription	NH-A	brain
39	chr2:153376200-153378400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr2:153376200-153378400	Enhancers	Brain Cingulate Gyrus	brain
41	chr2:153376200-153378400	Enhancers	Brain Substantia Nigra	brain
42	chr2:153376200-153379200	Weak transcription	Osteobl	bone
43	chr2:153376200-153379400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr2:153376200-153380800	Weak transcription	NHEK	skin
45	chr2:153376200-153382800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr2:153376200-153384800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr2:153376200-153384800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr2:153376400-153378400	Enhancers	Brain Anterior Caudate	brain
49	chr2:153376400-153378800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:153376400-153379200	Weak transcription	HMEC	breast

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