Variant report

Variant	rs10189184
Chromosome Location	chr2:55126056-55126057
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55122046..55124252-chr2:55124464..55126303,3	MCF-7	breast:
2	chr2:55123462..55125095-chr2:55125621..55127233,2	MCF-7	breast:
3	chr2:55120173..55122333-chr2:55124238..55126728,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10189076	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438817	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2033412	0.85[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs2163618	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4341981	0.83[EUR][1000 genomes]
rs4671986	0.94[EUR][1000 genomes]
rs62134775	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs891777	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891778	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55095200-55148200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr2:55109200-55126800	Weak transcription	Brain Angular Gyrus	brain
3	chr2:55109200-55127600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:55120400-55130200	Weak transcription	Hela-S3	cervix
5	chr2:55122000-55130200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:55123000-55126800	Weak transcription	HSMMtube	muscle
7	chr2:55123000-55127400	Weak transcription	Brain Anterior Caudate	brain
8	chr2:55123000-55127400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:55123200-55126800	Weak transcription	Brain Substantia Nigra	brain
10	chr2:55123200-55127000	Enhancers	Thymus	Thymus
11	chr2:55123200-55128200	Weak transcription	HepG2	liver
12	chr2:55123400-55127600	Enhancers	Fetal Thymus	thymus
13	chr2:55123400-55130800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:55123600-55126600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr2:55124000-55126600	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:55124600-55127000	Enhancers	Fetal Brain Male	brain
17	chr2:55125000-55126200	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr2:55125000-55126800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr2:55125000-55126800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr2:55125200-55127600	Enhancers	Fetal Brain Female	brain
21	chr2:55125400-55126200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr2:55125400-55126200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr2:55125400-55126400	Enhancers	Primary T cells from cord blood	blood
24	chr2:55125400-55126400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr2:55125400-55126600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:55125400-55126600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr2:55125400-55126600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr2:55125400-55126800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:55125400-55128800	Enhancers	Duodenum Mucosa	Duodenum
30	chr2:55125600-55126800	Weak transcription	NHDF-Ad	bronchial
31	chr2:55125800-55126800	Weak transcription	Small Intestine	intestine
32	chr2:55125800-55131000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr2:55126000-55126400	Weak transcription	Fetal Muscle Leg	muscle
34	chr2:55126000-55130800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr2:55126000-55131000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr2:55126000-55131200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links