Variant report

Variant	rs10190414
Chromosome Location	chr2:49028351-49028352
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:49022010..49024033-chr2:49025700..49028628,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10164467	0.84[ASN][1000 genomes]
rs10178052	0.95[ASN][1000 genomes]
rs10183851	0.88[EUR][1000 genomes]
rs10185108	0.85[ASN][1000 genomes]
rs10191910	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10195401	0.82[ASN][1000 genomes]
rs10208693	0.93[ASN][1000 genomes]
rs10211656	0.88[ASN][1000 genomes]
rs10445931	0.80[ASN][1000 genomes]
rs12619514	0.91[ASN][1000 genomes]
rs12713015	0.89[ASN][1000 genomes]
rs12713017	0.86[ASN][1000 genomes]
rs13011911	0.81[EUR][1000 genomes]
rs13016625	0.85[ASN][1000 genomes]
rs4264602	0.85[ASN][1000 genomes]
rs4384834	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4401253	0.85[ASN][1000 genomes]
rs4414727	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4434043	0.85[ASN][1000 genomes]
rs4482537	0.85[ASN][1000 genomes]
rs4494801	0.82[ASN][1000 genomes]
rs4538253	0.82[ASN][1000 genomes]
rs4571098	0.81[EUR][1000 genomes]
rs4610098	0.88[EUR][1000 genomes]
rs4621207	0.82[ASN][1000 genomes]
rs6545074	0.81[ASN][1000 genomes]
rs6545075	0.83[ASN][1000 genomes]
rs6721901	0.82[ASN][1000 genomes]
rs6725364	0.94[ASN][1000 genomes]
rs6729545	0.82[ASN][1000 genomes]
rs6744399	0.83[ASN][1000 genomes]
rs7567952	0.85[ASN][1000 genomes]
rs7603311	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002793	chr2:48771220-49466550	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1004965	chr2:48796170-49443587	Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv535684	chr2:48796170-49443587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv498119	chr2:48808834-49422647	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv998864	chr2:49015878-49230000	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1014434	chr2:49016279-49053699	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48994600-49080200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:49027200-49028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:49027200-49037000	Weak transcription	Ovary	ovary

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