Variant report

Variant	rs10191395
Chromosome Location	chr2:211363997-211363998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10172081	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10932341	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10932342	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10932343	0.82[ASN][1000 genomes]
rs11904031	0.84[ASN][1000 genomes]
rs12472153	0.86[ASN][1000 genomes]
rs12475210	0.84[ASN][1000 genomes]
rs2012564	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2247029	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247708	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2250976	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2544304	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2544305	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2544306	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2544307	0.85[ASN][1000 genomes]
rs2544308	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2544310	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2544311	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2544312	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2664229	0.80[EUR][1000 genomes]
rs2664230	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2664231	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2664232	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2664233	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2664234	0.86[ASN][1000 genomes]
rs2664236	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2664237	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2887913	0.82[ASN][1000 genomes]
rs3914067	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5009272	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6744672	0.82[ASN][1000 genomes]
rs6749355	0.82[ASN][1000 genomes]
rs951878	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs981024	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3459962	chr2:211360526-211368951	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3459963	chr2:211360858-211368614	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211361400-211367400	Weak transcription	Brain Angular Gyrus	brain
2	chr2:211363400-211364200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:211363400-211364200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:211363400-211364400	ZNF genes & repeats	NHEK	skin
5	chr2:211363400-211364600	ZNF genes & repeats	HMEC	breast
6	chr2:211363400-211365800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:211363600-211364000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:211363600-211364000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr2:211363600-211364400	ZNF genes & repeats	Lung	lung
10	chr2:211363600-211364600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:211363600-211364600	ZNF genes & repeats	Ovary	ovary
12	chr2:211363800-211364600	Enhancers	Brain Anterior Caudate	brain
13	chr2:211363800-211364600	Enhancers	Brain Substantia Nigra	brain

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