Variant report

Variant	rs10192852
Chromosome Location	chr2:208896631-208896632
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10176821	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10176955	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10200490	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11893075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899909	1.00[AMR][1000 genomes]
rs13383276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13391113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs730419	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73066727	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73066744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73066746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv875743	chr2:208688648-208940023	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv961925	chr2:208892380-208897020	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208890800-208899400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:208891000-208904200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:208891000-208905400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:208895200-208899200	Enhancers	Placenta	Placenta
5	chr2:208895400-208897000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr2:208895400-208897600	Enhancers	Fetal Intestine Small	intestine
7	chr2:208895400-208897800	Enhancers	Fetal Intestine Large	intestine
8	chr2:208895600-208897400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr2:208895800-208897400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:208896000-208897400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:208896000-208897400	Enhancers	Adipose Nuclei	Adipose
12	chr2:208896200-208896800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:208896200-208896800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr2:208896200-208897000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:208896200-208897000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:208896200-208897000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:208896400-208896800	Enhancers	HMEC	breast
18	chr2:208896400-208897200	Enhancers	Stomach Smooth Muscle	stomach
19	chr2:208896400-208897200	Enhancers	GM12878-XiMat	blood
20	chr2:208896400-208897400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr2:208896600-208898400	Enhancers	HepG2	liver
22	chr2:208896600-208901000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:208896600-208907600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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