Variant report

Variant	rs10194458
Chromosome Location	chr2:36904911-36904912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10210375	0.81[AFR][1000 genomes]
rs60424242	1.00[AMR][1000 genomes]
rs61365906	1.00[AMR][1000 genomes]
rs72868404	1.00[AMR][1000 genomes]
rs72868469	1.00[AMR][1000 genomes]
rs73923031	1.00[AMR][1000 genomes]
rs73927027	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv963871	chr2:36896580-36913813	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36903200-36905200	Enhancers	Primary T cells from cord blood	blood
2	chr2:36903200-36905400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:36903400-36905200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr2:36903800-36905000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:36904000-36905200	Enhancers	Thymus	Thymus
6	chr2:36904000-36905600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:36904000-36905600	Enhancers	Fetal Thymus	thymus
8	chr2:36904000-36905800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr2:36904000-36905800	Enhancers	Primary hematopoietic stem cells	blood
10	chr2:36904200-36905000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr2:36904200-36905600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr2:36904200-36905800	Enhancers	HUVEC	blood vessel
13	chr2:36904600-36905000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:36904600-36905400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:36904600-36905600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:36904600-36905600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr2:36904600-36905600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:36904600-36905600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr2:36904800-36905000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr2:36904800-36905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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