Variant report

Variant	rs10195303
Chromosome Location	chr2:191128618-191128619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10173651	1.00[AFR][1000 genomes]
rs10183567	1.00[AFR][1000 genomes]
rs10203186	0.90[AFR][1000 genomes]
rs10205910	0.90[AFR][1000 genomes]
rs13384409	1.00[AFR][1000 genomes]
rs13390473	1.00[AFR][1000 genomes]
rs13398619	0.89[AFR][1000 genomes]
rs13398620	0.89[AFR][1000 genomes]
rs13401506	1.00[AFR][1000 genomes]
rs13406709	1.00[AFR][1000 genomes]
rs13410853	1.00[AFR][1000 genomes]
rs13416848	0.89[AFR][1000 genomes]
rs13432317	0.90[AFR][1000 genomes]
rs16832465	1.00[AFR][1000 genomes]
rs16832616	0.90[AFR][1000 genomes]
rs16832648	1.00[AFR][1000 genomes]
rs28407355	1.00[AFR][1000 genomes]
rs28571630	1.00[AFR][1000 genomes]
rs28625711	1.00[AFR][1000 genomes]
rs7570980	0.90[AFR][1000 genomes]
rs7596746	0.90[AFR][1000 genomes]
rs9653313	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875620	chr2:191100723-191141593	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875621	chr2:191117120-191177131	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191056800-191131800	Weak transcription	NHEK	skin
2	chr2:191060800-191180000	Weak transcription	Small Intestine	intestine
3	chr2:191089000-191128800	Weak transcription	Gastric	stomach
4	chr2:191099400-191131800	Weak transcription	HMEC	breast
5	chr2:191100000-191150400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:191104400-191151000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:191105000-191180000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:191106200-191132200	Weak transcription	Hela-S3	cervix
9	chr2:191106600-191131800	Weak transcription	NHLF	lung
10	chr2:191107400-191150600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:191108000-191129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:191108200-191129200	Weak transcription	Spleen	Spleen
13	chr2:191108200-191135400	Weak transcription	Right Ventricle	heart
14	chr2:191108200-191180000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:191109600-191135800	Weak transcription	Fetal Brain Female	brain
16	chr2:191109800-191132800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:191109800-191163000	Weak transcription	Brain Germinal Matrix	brain
18	chr2:191110000-191145400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:191115600-191162200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:191115600-191182000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr2:191116200-191131800	Weak transcription	HUVEC	blood vessel
22	chr2:191116200-191131800	Weak transcription	NHDF-Ad	bronchial
23	chr2:191116400-191135200	Weak transcription	K562	blood
24	chr2:191116600-191183200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr2:191117400-191183600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr2:191118600-191132000	Weak transcription	NH-A	brain
27	chr2:191121000-191132000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:191121000-191181400	Weak transcription	Brain Angular Gyrus	brain
29	chr2:191121200-191145200	Weak transcription	Aorta	Aorta
30	chr2:191122800-191133800	Weak transcription	Colon Smooth Muscle	Colon
31	chr2:191123000-191129400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:191123000-191131200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:191123200-191131200	Weak transcription	Fetal Thymus	thymus
34	chr2:191123200-191137200	Weak transcription	Pancreas	Pancrea
35	chr2:191123200-191142200	Weak transcription	Brain Anterior Caudate	brain
36	chr2:191123200-191145600	Weak transcription	Brain Substantia Nigra	brain
37	chr2:191123200-191145800	Weak transcription	HSMMtube	muscle
38	chr2:191123200-191150200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:191123200-191150200	Weak transcription	Brain Hippocampus Middle	brain
40	chr2:191123200-191177600	Weak transcription	Colonic Mucosa	Colon
41	chr2:191123400-191131200	Weak transcription	Fetal Intestine Small	intestine
42	chr2:191123400-191131800	Weak transcription	A549	lung
43	chr2:191123400-191132200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:191123400-191134000	Weak transcription	Fetal Brain Male	brain
45	chr2:191123400-191143600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr2:191123400-191143800	Weak transcription	Fetal Muscle Leg	muscle
47	chr2:191123400-191144600	Weak transcription	Lung	lung
48	chr2:191123400-191150800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr2:191123400-191160000	Weak transcription	Ovary	ovary
50	chr2:191123600-191130000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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