Variant report

Variant	rs10196361
Chromosome Location	chr2:49942227-49942228
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10185615	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10192142	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10204924	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1040240	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12623969	0.83[EUR][1000 genomes]
rs13391175	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17489439	0.92[ASN][1000 genomes]
rs4255993	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430991	chr2:49836326-49971708	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv874027	chr2:49862134-49956426	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv470458	chr2:49871330-49946543	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv961773	chr2:49879626-50011234	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874028	chr2:49913955-49962090	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10196361	KLRAQ1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:49939800-49943000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:49941400-49945200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:49941800-49943000	Weak transcription	Gastric	stomach
4	chr2:49941800-49943000	Weak transcription	Pancreas	Pancrea
5	chr2:49941800-49943400	Weak transcription	Right Ventricle	heart
6	chr2:49942000-49943000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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