Variant report
Variant | rs1019709 |
---|---|
Chromosome Location | chr12:40802150-40802151 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | 12:40793507-40812339..12:40836437-40839614 | H1-hESC | embryonic stem cell: | embryo |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000258167 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10459265 | 0.81[JPT][hapmap] |
rs10735934 | 0.81[JPT][hapmap] |
rs10784585 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap] |
rs10784589 | 0.87[ASN][1000 genomes] |
rs10784595 | 0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
rs10784596 | 0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
rs10878507 | 0.99[ASN][1000 genomes] |
rs11176421 | 0.95[ASN][1000 genomes] |
rs11176495 | 0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1820544 | 0.84[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1820545 | 0.94[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2081700 | 0.82[ASN][1000 genomes] |
rs2081701 | 0.81[JPT][hapmap];0.82[ASN][1000 genomes] |
rs2404840 | 0.82[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.87[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2896982 | 0.81[JPT][hapmap];0.82[ASN][1000 genomes] |
rs3906483 | 0.89[ASN][1000 genomes] |
rs4280068 | 0.82[ASN][1000 genomes] |
rs4351885 | 0.82[ASN][1000 genomes] |
rs6581667 | 0.81[JPT][hapmap] |
rs6581668 | 0.81[JPT][hapmap] |
rs7137809 | 0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
rs7307562 | 0.81[JPT][hapmap] |
rs7308560 | 0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
rs7310390 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs7954318 | 0.82[ASN][1000 genomes] |
rs7968721 | 0.82[ASN][1000 genomes] |
rs7972535 | 0.86[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
rs7975124 | 0.81[JPT][hapmap];0.82[ASN][1000 genomes] |
rs994798 | 0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv832377 | chr12:40704881-40855223 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | nsv899032 | chr12:40735939-40827479 | Weak transcription ZNF genes & repeats Strong transcription Enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
3 | nsv558598 | chr12:40742363-40828264 | Strong transcription Weak transcription Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
4 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
5 | nsv1047639 | chr12:40774370-40804386 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv558599 | chr12:40790698-40814452 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
7 | nsv983242 | chr12:40797402-40802980 | Weak transcription Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:40799600-40813200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |