Variant report

Variant	rs10197932
Chromosome Location	chr2:9795089-9795090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9769776..9771505-chr2:9795001..9797519,2	K562	blood:
2	chr2:9778018..9780568-chr2:9793790..9796630,2	K562	blood:
3	chr2:9790369..9792598-chr2:9793390..9795838,2	MCF-7	breast:
4	chr2:9782654..9789334-chr2:9794560..9799702,7	MCF-7	breast:
5	chr2:9636239..9638571-chr2:9793118..9795513,2	K562	blood:
6	chr2:9613633..9616177-chr2:9794097..9796795,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134330	Chromatin interaction
ENSG00000240687	Chromatin interaction
ENSG00000134308	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6432029	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580915	chr2:9308148-9844178	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1011802	chr2:9766171-9808284	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9789400-9796600	Weak transcription	Gastric	stomach
2	chr2:9789400-9797600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:9789600-9795800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:9789600-9796400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:9790800-9797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:9790800-9799200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:9790800-9801000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:9792400-9795200	Enhancers	Brain Angular Gyrus	brain
9	chr2:9792400-9795600	Enhancers	Brain Anterior Caudate	brain
10	chr2:9792600-9795200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr2:9792800-9795400	Enhancers	GM12878-XiMat	blood
12	chr2:9792800-9801600	Weak transcription	Spleen	Spleen
13	chr2:9794000-9796800	Enhancers	Brain Substantia Nigra	brain
14	chr2:9794200-9795200	Bivalent Enhancer	HepG2	liver
15	chr2:9794200-9797200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr2:9794200-9799400	Enhancers	HMEC	breast
17	chr2:9794400-9795200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:9794400-9795200	Enhancers	Brain Hippocampus Middle	brain
19	chr2:9794400-9795400	Enhancers	Hela-S3	cervix
20	chr2:9794400-9795600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr2:9794400-9796600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:9794400-9797600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr2:9794400-9797600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr2:9794400-9797600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:9794400-9797600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr2:9794400-9797600	Enhancers	NHEK	skin
27	chr2:9794400-9798000	Enhancers	NHLF	lung
28	chr2:9794400-9799600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr2:9794400-9800400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:9794600-9795200	Enhancers	Brain Cingulate Gyrus	brain
31	chr2:9794600-9796000	Enhancers	NH-A	brain
32	chr2:9794600-9796800	Enhancers	K562	blood
33	chr2:9794600-9798400	Enhancers	NHDF-Ad	bronchial
34	chr2:9794600-9799600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr2:9794800-9795600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:9794800-9797000	Weak transcription	Ovary	ovary
37	chr2:9794800-9797400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr2:9794800-9797800	Enhancers	HUVEC	blood vessel
39	chr2:9794800-9799000	Weak transcription	Placenta	Placenta
40	chr2:9794800-9800400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr2:9795000-9795400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:9795000-9795400	Enhancers	A549	lung
43	chr2:9795000-9796600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr2:9795000-9797400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr2:9795000-9798000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr2:9795000-9798600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr2:9795000-9799200	Enhancers	Osteobl	bone

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