Variant report

Variant	rs10198161
Chromosome Location	chr2:189045989-189045990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10168466	0.80[AFR][1000 genomes]
rs10173390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13389097	0.90[AFR][1000 genomes]
rs13400817	0.80[AFR][1000 genomes]
rs13407674	0.80[AFR][1000 genomes]
rs13423258	0.80[AFR][1000 genomes]
rs13424983	0.88[AFR][1000 genomes]
rs6726334	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6732273	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6743691	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv875605	chr2:189017499-189080087	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv521460	chr2:189025977-189046900	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189034200-189050000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:189044800-189046000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:189045400-189046000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr2:189045400-189046600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:189045600-189046200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:189045600-189046200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:189045600-189046200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:189045600-189046200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:189045600-189046400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:189045600-189046600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:189045600-189047200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:189045600-189047200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr2:189045600-189047400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:189045800-189046200	Active TSS	Primary hematopoietic stem cells	blood
15	chr2:189045800-189046400	Active TSS	NHDF-Ad	bronchial
16	chr2:189045800-189046600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr2:189045800-189046600	Enhancers	HMEC	breast
18	chr2:189045800-189046800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr2:189045800-189047000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr2:189045800-189047200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr2:189045800-189047400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links