Variant report

Variant	rs10198781
Chromosome Location	chr2:173925215-173925216
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr2:173924796-173925334	A549	lung:	n/a	chr2:173925270-173925281
2	CEBPB	chr2:173924917-173925265	Hela-S3	cervix:	n/a	n/a
3	MYC	chr2:173924943-173925266	MCF10A-Er-Src	breast:	n/a	n/a
4	FOSL2	chr2:173924790-173925312	A549	lung:	n/a	n/a
5	CEBPB	chr2:173924812-173925239	MCF-7	breast:	n/a	n/a
6	FOS	chr2:173924938-173925215	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr2:173924855-173925230	MCF-7	breast:	n/a	n/a
8	CEBPB	chr2:173924928-173925218	A549	lung:	n/a	n/a
9	POLR2A	chr2:173925088-173925288	MCF10A-Er-Src	breast:	n/a	n/a
10	MYC	chr2:173925032-173925232	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr2:173924940-173925233	MCF10A-Er-Src	breast:	n/a	n/a
12	CEBPB	chr2:173924938-173925262	A549	lung:	n/a	n/a
13	POLR2A	chr2:173924999-173925361	MCF10A-Er-Src	breast:	n/a	n/a
14	CEBPB	chr2:173924952-173925221	IMR90	lung:	n/a	n/a
15	TCF12	chr2:173924780-173925318	A549	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:173919334..173920934-chr2:173923868..173926375,2	K562	blood:
2	chr2:173925105..173930317-chr2:173940081..173942061,4	MCF-7	breast:
3	chr2:173922841..173925696-chr2:173937361..173940989,3	K562	blood:
4	chr2:173924576..173926125-chr2:173943190..173944804,2	K562	blood:
5	chr2:173895188..173897397-chr2:173924507..173926059,2	MCF-7	breast:
6	chr2:173913769..173915858-chr2:173923685..173926368,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265709	TF binding region
ENSG00000091436	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4972396	0.85[AFR][1000 genomes]
rs6433396	0.85[AFR][1000 genomes]
rs6433397	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173915200-173929200	Weak transcription	Fetal Lung	lung
2	chr2:173916800-173927600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:173920600-173937200	Weak transcription	Psoas Muscle	Psoas
4	chr2:173921200-173925600	Enhancers	Adipose Nuclei	Adipose
5	chr2:173921200-173926400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr2:173922000-173926000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:173923400-173925400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr2:173923400-173925600	Enhancers	Primary B cells from cord blood	blood
9	chr2:173923800-173926200	Enhancers	HepG2	liver
10	chr2:173923800-173928600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:173924000-173925400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:173924200-173926200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr2:173924400-173926200	Enhancers	A549	lung
14	chr2:173924600-173925400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:173924600-173925800	Enhancers	NHDF-Ad	bronchial
16	chr2:173924600-173926000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:173924800-173925600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:173924800-173925600	Enhancers	NHEK	skin
19	chr2:173924800-173926000	Enhancers	HMEC	breast
20	chr2:173924800-173926200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr2:173925000-173925400	Enhancers	Primary hematopoietic stem cells	blood
22	chr2:173925200-173925800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:173925200-173926000	Weak transcription	Ovary	ovary
24	chr2:173925200-173926200	Enhancers	Liver	Liver
25	chr2:173925200-173930400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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