Variant report

Variant	rs10199035
Chromosome Location	chr2:233913648-233913649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10165997	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10179940	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11674444	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12694922	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28574597	0.81[EUR][1000 genomes]
rs4439944	0.83[CEU][hapmap]
rs61571629	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv876009	chr2:233799400-233996429	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv876012	chr2:233899377-233996429	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233909400-233915800	Weak transcription	Right Atrium	heart
2	chr2:233912400-233915000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr2:233912800-233914600	Enhancers	Fetal Muscle Leg	muscle
4	chr2:233913400-233914400	Enhancers	HMEC	breast
5	chr2:233913400-233914400	Enhancers	HSMMtube	muscle
6	chr2:233913400-233916000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:233913600-233913800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:233913600-233913800	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:233913600-233914000	Enhancers	Esophagus	oesophagus
10	chr2:233913600-233914000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr2:233913600-233914200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:233913600-233914600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr2:233913600-233914800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr2:233913600-233914800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr2:233913600-233914800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:233913600-233915000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links