Variant report

Variant	rs10200207
Chromosome Location	chr2:20772486-20772487
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20767932..20773273-chr2:20783089..20788305,5	K562	blood:
2	chr2:20645867..20648362-chr2:20770635..20772799,2	MCF-7	breast:
3	chr2:20765813..20767349-chr2:20771074..20773656,2	K562	blood:
4	chr2:20771832..20774645-chr2:20774771..20777739,3	K562	blood:
5	chr2:20772318..20774948-chr2:20792924..20794926,2	K562	blood:
6	chr2:20767067..20768963-chr2:20770778..20773313,2	MCF-7	breast:
7	chr2:20649039..20651815-chr2:20770152..20773876,3	MCF-7	breast:
8	chr2:20753369..20755156-chr2:20771660..20773736,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000269976	Chromatin interaction
ENSG00000228950	Chromatin interaction
ENSG00000143878	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10166792	0.95[ASN][1000 genomes]
rs10177787	0.95[ASN][1000 genomes]
rs10190705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10195324	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195722	0.85[ASN][1000 genomes]
rs10204567	0.92[AFR][1000 genomes]
rs11096676	0.90[ASN][1000 genomes]
rs11096677	0.95[ASN][1000 genomes]
rs1123781	0.94[ASN][1000 genomes]
rs11691255	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11897611	0.85[ASN][1000 genomes]
rs12472478	0.85[ASN][1000 genomes]
rs12621527	0.83[ASN][1000 genomes]
rs13422371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16987857	0.90[ASN][1000 genomes]
rs16987878	0.83[ASN][1000 genomes]
rs16987880	0.83[ASN][1000 genomes]
rs2882035	0.95[ASN][1000 genomes]
rs2882036	0.90[ASN][1000 genomes]
rs4666315	0.95[ASN][1000 genomes]
rs4666426	0.90[ASN][1000 genomes]
rs4666427	0.90[ASN][1000 genomes]
rs4666429	0.95[ASN][1000 genomes]
rs4666430	0.85[ASN][1000 genomes]
rs4666431	0.85[ASN][1000 genomes]
rs55835545	0.83[ASN][1000 genomes]
rs56129345	0.89[ASN][1000 genomes]
rs72782365	0.88[ASN][1000 genomes]
rs72782367	0.82[ASN][1000 genomes]
rs72782368	0.83[ASN][1000 genomes]
rs766474	0.90[ASN][1000 genomes]
rs921601	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833537	chr2:20630092-20826816	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv833548	chr2:20682073-20864078	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1012037	chr2:20770850-20824893	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv535598	chr2:20770850-20824893	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20751600-20772600	Weak transcription	Brain Angular Gyrus	brain
2	chr2:20764400-20778200	Enhancers	HepG2	liver
3	chr2:20765600-20780800	Enhancers	Adipose Nuclei	Adipose
4	chr2:20765800-20773600	Weak transcription	Fetal Thymus	thymus
5	chr2:20765800-20786200	Enhancers	HUVEC	blood vessel
6	chr2:20766000-20772600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:20766000-20773600	Weak transcription	Fetal Kidney	kidney
8	chr2:20766200-20773400	Weak transcription	Brain Germinal Matrix	brain
9	chr2:20766400-20772800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:20766400-20776000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr2:20766800-20780800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:20766800-20781000	Enhancers	Left Ventricle	heart
13	chr2:20767000-20781000	Enhancers	Right Atrium	heart
14	chr2:20767200-20776600	Enhancers	Right Ventricle	heart
15	chr2:20767400-20774400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:20767400-20774600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr2:20767400-20778200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr2:20767800-20778600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:20767800-20782600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:20768000-20773400	Weak transcription	Fetal Lung	lung
21	chr2:20768200-20772800	Enhancers	Liver	Liver
22	chr2:20768400-20774800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr2:20768600-20773600	Weak transcription	Fetal Heart	heart
24	chr2:20768600-20777200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:20768800-20773400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:20769000-20773200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr2:20769200-20773400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr2:20769200-20774600	Enhancers	Fetal Intestine Small	intestine
29	chr2:20769200-20777000	Weak transcription	HMEC	breast
30	chr2:20769400-20773200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:20769400-20773600	Weak transcription	Fetal Brain Female	brain
32	chr2:20769400-20780000	Enhancers	Fetal Intestine Large	intestine
33	chr2:20769600-20772800	Weak transcription	Brain Hippocampus Middle	brain
34	chr2:20769600-20773000	Weak transcription	Osteobl	bone
35	chr2:20769600-20773200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:20769600-20773400	Weak transcription	NHDF-Ad	bronchial
37	chr2:20769800-20772800	Weak transcription	Brain Anterior Caudate	brain
38	chr2:20769800-20773200	Weak transcription	Fetal Brain Male	brain
39	chr2:20769800-20773600	Weak transcription	NHEK	skin
40	chr2:20769800-20774200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr2:20769800-20781000	Enhancers	Fetal Muscle Leg	muscle
42	chr2:20770200-20773400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:20770400-20773600	Weak transcription	Esophagus	oesophagus
44	chr2:20770800-20773000	Weak transcription	Brain Substantia Nigra	brain
45	chr2:20771200-20773200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr2:20771200-20774600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:20771400-20774400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr2:20771400-20774800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:20771400-20775000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr2:20771600-20773400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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