Variant report

Variant	rs10200225
Chromosome Location	chr2:111778564-111778565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:111777002..111779950-chr2:111790531..111792084,2	MCF-7	breast:
2	chr2:111774043..111776327-chr2:111778491..111780974,2	K562	blood:
3	chr2:111774043..111778118-chr2:111778491..111781647,4	K562	blood:
4	chr2:111777915..111779966-chr2:111780701..111783354,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10183208	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10496436	0.90[ASN][1000 genomes]
rs11123295	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11679060	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11691621	0.88[ASN][1000 genomes]
rs11896172	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11896876	0.90[AFR][1000 genomes]
rs1384792	1.00[CEU][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1483531	1.00[CEU][hapmap];0.81[MEX][hapmap];0.83[EUR][1000 genomes]
rs2062223	1.00[CEU][hapmap]
rs2062224	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2341657	1.00[CEU][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2341658	1.00[CEU][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3761707	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs3789094	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs3789096	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4848369	0.89[AFR][1000 genomes]
rs4849327	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4849341	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6722565	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6723578	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6738187	0.84[MKK][hapmap]
rs72834565	0.90[ASN][1000 genomes]
rs72834566	0.90[ASN][1000 genomes]
rs7594735	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7598867	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7601853	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874839	chr2:111400934-111868010	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997829	chr2:111486961-111780537	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv834330	chr2:111593290-111789447	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1004949	chr2:111607532-111780719	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1002568	chr2:111607532-111781442	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111770200-111786600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:111772800-111780200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr2:111775200-111786400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:111775200-111787800	Weak transcription	Spleen	Spleen
5	chr2:111777600-111780000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr2:111778400-111779600	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links