Variant report

Variant	rs10200676
Chromosome Location	chr2:36906563-36906564
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10179042	0.81[ASN][1000 genomes]
rs1159960	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11684801	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12465428	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192889	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34467917	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34600435	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34646789	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35301907	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35326069	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4670155	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4670157	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670584	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4670585	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4670588	0.80[EUR][1000 genomes]
rs67003556	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6713060	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67139069	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718312	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587877	0.88[ASN][1000 genomes]
rs7590589	0.91[ASN][1000 genomes]
rs7602835	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv963871	chr2:36896580-36913813	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36905400-36907000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:36905400-36907000	Weak transcription	NHLF	lung
3	chr2:36905600-36906800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:36905800-36907000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:36905800-36907000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:36905800-36907000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:36905800-36907000	Weak transcription	HUVEC	blood vessel

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