The 2.0 version of rSNPBase

Variant report

Variant rs10201734
Chromosome Location chr2:55129171-55129172
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55095200-55148200 Weak transcription Primary B cells from peripheral blood blood
2 chr2:55120400-55130200 Weak transcription Hela-S3 cervix
3 chr2:55122000-55130200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr2:55123400-55130800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr2:55125800-55131000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
6 chr2:55126000-55130800 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr2:55126000-55131000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
8 chr2:55126000-55131200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr2:55126200-55130800 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr2:55126600-55129200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
11 chr2:55126600-55129800 Enhancers Fetal Intestine Large intestine
12 chr2:55127000-55130600 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr2:55127000-55132400 Weak transcription Fetal Brain Male brain
14 chr2:55127400-55129200 Enhancers Liver Liver
15 chr2:55127400-55129600 Enhancers Fetal Intestine Small intestine
16 chr2:55127600-55130400 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr2:55127600-55130600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr2:55127600-55130600 Weak transcription HSMMtube muscle
19 chr2:55127600-55131000 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr2:55127600-55131400 Weak transcription Fetal Thymus thymus
21 chr2:55127600-55133400 Weak transcription Fetal Brain Female brain
22 chr2:55127800-55129600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr2:55127800-55130400 Weak transcription Osteobl bone
24 chr2:55127800-55133400 Weak transcription Brain Substantia Nigra brain
25 chr2:55127800-55133600 Weak transcription Brain Inferior Temporal Lobe brain
26 chr2:55128000-55130000 Weak transcription Muscle Satellite Cultured Cells --
27 chr2:55128000-55130000 Weak transcription NHEK skin
28 chr2:55128000-55130800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr2:55128000-55131000 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr2:55128000-55133400 Weak transcription Brain Angular Gyrus brain
31 chr2:55128000-55133400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr2:55128000-55133800 Weak transcription Brain Anterior Caudate brain
33 chr2:55128200-55129200 Enhancers Fetal Muscle Leg muscle
34 chr2:55128400-55130800 Weak transcription Small Intestine intestine
35 chr2:55128800-55129200 Flanking Active TSS Duodenum Mucosa Duodenum
36 chr2:55128800-55129200 Flanking Active TSS Skeletal Muscle Male skeletal muscle
37 chr2:55128800-55129200 Flanking Active TSS Skeletal Muscle Female skeletal muscle
38 chr2:55128800-55129400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr2:55128800-55129400 Enhancers NHDF-Ad bronchial
40 chr2:55129000-55129200 Enhancers Adipose Nuclei Adipose
41 chr2:55129000-55129200 Enhancers Brain Hippocampus Middle brain
42 chr2:55129000-55129800 Enhancers Psoas Muscle Psoas
43 chr2:55129000-55131600 Weak transcription HepG2 liver

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Last update: Aug 31, 2015