Variant report

Variant	rs10202179
Chromosome Location	chr2:173314589-173314590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12693001	0.81[AMR][1000 genomes]
rs2178471	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7587375	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173305000-173316800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:173306800-173316400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:173307200-173318600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:173307400-173322400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:173307600-173314600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:173307600-173314800	Weak transcription	Esophagus	oesophagus
7	chr2:173307600-173315600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr2:173307600-173321000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr2:173309000-173317000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:173309200-173315200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:173309400-173315600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr2:173310400-173314600	Enhancers	HMEC	breast
13	chr2:173310400-173318000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr2:173310600-173314600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:173310800-173314600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:173310800-173314800	Weak transcription	Psoas Muscle	Psoas
17	chr2:173310800-173314800	Weak transcription	Spleen	Spleen
18	chr2:173310800-173317000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr2:173310800-173318200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr2:173310800-173318600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr2:173310800-173319800	Weak transcription	Fetal Muscle Leg	muscle
22	chr2:173310800-173320000	Weak transcription	Lung	lung
23	chr2:173310800-173322400	Weak transcription	Thymus	Thymus
24	chr2:173311000-173316400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:173311400-173315000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr2:173311400-173318000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr2:173311600-173314800	Weak transcription	NH-A	brain
28	chr2:173311600-173314800	Enhancers	NHEK	skin
29	chr2:173311600-173316000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr2:173311600-173316400	Weak transcription	Adipose Nuclei	Adipose
31	chr2:173311600-173317200	Weak transcription	Liver	Liver
32	chr2:173311600-173319000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr2:173311600-173319200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:173311600-173319200	Weak transcription	HUVEC	blood vessel
35	chr2:173311800-173317200	Weak transcription	Fetal Thymus	thymus
36	chr2:173311800-173319200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr2:173312200-173317000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr2:173312200-173319400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr2:173312200-173323600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:173312400-173314800	Enhancers	HSMMtube	muscle
41	chr2:173312400-173315000	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr2:173312400-173315000	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr2:173312400-173315600	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr2:173312400-173319200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr2:173312600-173314600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr2:173312600-173315200	Enhancers	H1 Cell Line	embryonic stem cell
47	chr2:173312600-173315200	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr2:173312600-173315400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr2:173312600-173316400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr2:173313000-173315800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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