Variant report

Variant	rs10202501
Chromosome Location	chr2:231285570-231285571
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:231276390..231278062-chr2:231285132..231287454,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1074464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12694867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12987948	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12992427	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13006418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017690	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273810	0.94[YRI][hapmap]
rs55798834	0.82[AFR][1000 genomes]
rs55900888	0.81[AFR][1000 genomes]
rs6737596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73000209	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231281600-231294800	Weak transcription	Gastric	stomach
2	chr2:231281800-231293000	Weak transcription	Fetal Stomach	stomach
3	chr2:231282000-231293400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:231282000-231294000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:231282400-231288600	Weak transcription	Fetal Intestine Small	intestine
6	chr2:231282400-231292600	Weak transcription	A549	lung
7	chr2:231282600-231288600	Weak transcription	Fetal Intestine Large	intestine
8	chr2:231282600-231290000	Weak transcription	Placenta	Placenta
9	chr2:231283400-231288400	Weak transcription	HepG2	liver
10	chr2:231283600-231287200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr2:231283600-231288600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:231283600-231288800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr2:231283600-231293800	Weak transcription	Fetal Lung	lung
14	chr2:231283600-231294800	Weak transcription	HSMM	muscle
15	chr2:231283600-231309200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:231283800-231285600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr2:231283800-231287000	Weak transcription	Aorta	Aorta
18	chr2:231283800-231287200	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:231283800-231288400	Weak transcription	K562	blood
20	chr2:231283800-231294600	Weak transcription	Fetal Heart	heart
21	chr2:231283800-231294800	Weak transcription	Esophagus	oesophagus
22	chr2:231284000-231287600	Genic enhancers	Primary monocytes fromperipheralblood	blood
23	chr2:231284200-231285600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr2:231284200-231285600	Weak transcription	NHLF	lung
25	chr2:231284200-231286000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr2:231284200-231286000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:231284200-231286400	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr2:231284200-231286600	Enhancers	HUVEC	blood vessel
29	chr2:231284200-231287000	Weak transcription	Left Ventricle	heart
30	chr2:231284200-231287000	Weak transcription	Pancreas	Pancrea
31	chr2:231284200-231287000	Weak transcription	NHDF-Ad	bronchial
32	chr2:231284200-231287200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr2:231284200-231288400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:231284200-231288400	Weak transcription	Right Atrium	heart
35	chr2:231284200-231288400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr2:231284200-231288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:231284200-231288600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr2:231284200-231288600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr2:231284200-231288600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr2:231284200-231288600	Weak transcription	Ovary	ovary
41	chr2:231284200-231288600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr2:231284200-231288600	Weak transcription	Right Ventricle	heart
43	chr2:231284200-231288800	Weak transcription	Psoas Muscle	Psoas
44	chr2:231284200-231290400	Genic enhancers	Primary B cells from peripheral blood	blood
45	chr2:231284200-231290400	Genic enhancers	Monocytes-CD14+_RO01746	blood
46	chr2:231284200-231290800	Weak transcription	Hela-S3	cervix
47	chr2:231284200-231292000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr2:231284200-231292200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr2:231284200-231292400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr2:231284200-231294800	Weak transcription	Lung	lung

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