Variant report

Variant	rs10202636
Chromosome Location	chr2:11482659-11482660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11482372..11487550-chr2:11525654..11531960,9	MCF-7	breast:
2	chr2:11373041..11376680-chr2:11481459..11486793,6	MCF-7	breast:
3	chr2:11481545..11486787-chr2:11491378..11496218,8	MCF-7	breast:
4	chr2:11292941..11297094-chr2:11480820..11486254,6	MCF-7	breast:
5	chr2:11481635..11483392-chr2:11587515..11589099,2	MCF-7	breast:
6	chr2:11482371..11485428-chr2:11534025..11537515,3	K562	blood:
7	chr2:11482129..11485059-chr2:11681594..11684381,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162976	Chromatin interaction
ENSG00000196208	Chromatin interaction
ENSG00000226961	Chromatin interaction
ENSG00000224177	Chromatin interaction
ENSG00000207267	Chromatin interaction
ENSG00000231403	Chromatin interaction
ENSG00000134318	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10168273	1.00[AFR][1000 genomes]
rs10187792	1.00[AFR][1000 genomes]
rs10202739	1.00[AFR][1000 genomes]
rs10210180	1.00[AFR][1000 genomes]
rs13393890	1.00[AFR][1000 genomes]
rs13398467	1.00[AFR][1000 genomes]
rs13409112	1.00[AFR][1000 genomes]
rs72789506	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526038	chr2:11369078-11489531	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11472200-11482800	Weak transcription	Gastric	stomach
2	chr2:11476600-11482800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:11479800-11485400	Active TSS	GM12878-XiMat	blood
4	chr2:11480000-11485800	Active TSS	Aorta	Aorta
5	chr2:11480200-11483000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr2:11480800-11483000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr2:11481000-11482800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr2:11481000-11483800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:11481000-11483800	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr2:11481000-11483800	Flanking Active TSS	Liver	Liver
11	chr2:11481000-11485200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:11481000-11485600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:11481000-11485600	Active TSS	NHLF	lung
14	chr2:11481000-11485800	Active TSS	Ovary	ovary
15	chr2:11481200-11482800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr2:11481200-11483600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:11481200-11484400	Bivalent/Poised TSS	HepG2	liver
18	chr2:11481200-11484600	Active TSS	Right Atrium	heart
19	chr2:11481200-11485600	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr2:11481400-11482800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr2:11481400-11482800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr2:11481400-11483200	Active TSS	Brain Angular Gyrus	brain
23	chr2:11481600-11482800	Weak transcription	Fetal Heart	heart
24	chr2:11481600-11485400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:11481600-11485400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:11481600-11485600	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr2:11481600-11485600	Active TSS	Brain Germinal Matrix	brain
28	chr2:11481600-11485800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:11481800-11483200	Weak transcription	Small Intestine	intestine
30	chr2:11481800-11483800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:11481800-11483800	Active TSS	Fetal Brain Female	brain
32	chr2:11481800-11485200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr2:11481800-11485600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:11481800-11485600	Active TSS	Fetal Intestine Large	intestine
35	chr2:11481800-11485600	Active TSS	NHDF-Ad	bronchial
36	chr2:11481800-11485800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr2:11481800-11486000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr2:11482000-11485400	Active TSS	A549	lung
39	chr2:11482000-11485400	Active TSS	Hela-S3	cervix
40	chr2:11482000-11485800	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr2:11482000-11486000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:11482000-11486000	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr2:11482200-11483000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr2:11482200-11483000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr2:11482200-11483000	Enhancers	Primary T cells fromperipheralblood	blood
46	chr2:11482200-11483000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr2:11482200-11483000	Flanking Active TSS	NHEK	skin
48	chr2:11482200-11483200	Enhancers	Primary B cells from peripheral blood	blood
49	chr2:11482200-11483400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
50	chr2:11482200-11483600	Flanking Active TSS	Dnd41	blood

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