Variant report

Variant	rs10202767
Chromosome Location	chr2:95810083-95810084
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:95802957..95805442-chr2:95808699..95810395,2	K562	blood:
2	chr2:95809742..95812254-chr2:95813826..95816105,2	MCF-7	breast:
3	chr2:95808395..95810463-chr2:95811272..95813300,2	MCF-7	breast:
4	chr2:95807568..95810120-chr2:95838335..95841142,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144029	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10201886	0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13423271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36120917	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73957746	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005016	chr2:95327875-95914467	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv817258	chr2:95618109-96340788	Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv482276	chr2:95711972-95888406	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1008945	chr2:95745367-96062107	Weak transcription Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv817299	chr2:95799814-96159275	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:95803000-95821600	ZNF genes & repeats	Fetal Brain Female	brain
2	chr2:95803400-95821400	ZNF genes & repeats	Brain Germinal Matrix	brain
3	chr2:95803600-95822600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr2:95806800-95810400	ZNF genes & repeats	Fetal Brain Male	brain
5	chr2:95807600-95819200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
6	chr2:95807800-95821200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr2:95807800-95823200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:95808000-95821600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr2:95808000-95821600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
10	chr2:95808000-95823200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:95808200-95819000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr2:95808200-95821200	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr2:95808200-95821400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:95808200-95821400	ZNF genes & repeats	Fetal Lung	lung
15	chr2:95808200-95822000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:95808200-95822200	ZNF genes & repeats	Fetal Muscle Leg	muscle
17	chr2:95808200-95823000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr2:95808200-95823400	ZNF genes & repeats	Liver	Liver
19	chr2:95808400-95813000	ZNF genes & repeats	Ovary	ovary
20	chr2:95808400-95813000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
21	chr2:95808400-95819000	ZNF genes & repeats	Brain Substantia Nigra	brain
22	chr2:95808400-95820200	ZNF genes & repeats	Brain Hippocampus Middle	brain
23	chr2:95808400-95823800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:95808600-95812800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr2:95808600-95820200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
26	chr2:95809000-95813200	Weak transcription	Fetal Heart	heart
27	chr2:95809200-95810400	ZNF genes & repeats	Fetal Stomach	stomach
28	chr2:95809400-95810400	ZNF genes & repeats	Colon Smooth Muscle	Colon
29	chr2:95809400-95810400	ZNF genes & repeats	Placenta	Placenta
30	chr2:95809400-95823000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:95809400-95824600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr2:95809600-95810200	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr2:95809600-95810400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr2:95809600-95810400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr2:95809600-95813000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
36	chr2:95809600-95813000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
37	chr2:95809600-95820200	ZNF genes & repeats	Left Ventricle	heart
38	chr2:95809600-95823600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:95809600-95823600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr2:95809600-95823800	ZNF genes & repeats	Fetal Intestine Small	intestine
41	chr2:95809800-95810400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:95809800-95810400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr2:95809800-95810400	ZNF genes & repeats	Lung	lung
44	chr2:95809800-95810600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:95809800-95810600	ZNF genes & repeats	Right Ventricle	heart
46	chr2:95809800-95811000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:95809800-95812800	ZNF genes & repeats	Aorta	Aorta
48	chr2:95809800-95818200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
49	chr2:95809800-95819200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr2:95809800-95820000	ZNF genes & repeats	Psoas Muscle	Psoas

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