Variant report

Variant	rs10202944
Chromosome Location	chr2:72257858-72257859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10195394	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13412195	0.96[ASN][1000 genomes]
rs13416099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417153	0.85[ASN][1000 genomes]
rs17007680	0.83[ASN][1000 genomes]
rs8179675	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874260	chr2:72242013-72268093	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv874261	chr2:72242013-72270790	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv874262	chr2:72242013-72279514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3584760	chr2:72249991-72271489	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv874263	chr2:72251751-72279514	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10202944	CD247	trans	brain	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72251400-72259800	Weak transcription	Spleen	Spleen
2	chr2:72255400-72258600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:72255600-72260200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:72255800-72258200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:72257600-72260400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:72257600-72261200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:72257800-72259200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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