Variant report

Variant	rs10203555
Chromosome Location	chr2:37247984-37247985
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10177767	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10177998	0.95[AFR][1000 genomes]
rs10189982	1.00[AMR][1000 genomes]
rs10202107	1.00[YRI][hapmap]
rs10203038	1.00[AMR][1000 genomes]
rs10208622	1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12329214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12712524	0.95[AFR][1000 genomes]
rs13389034	1.00[YRI][hapmap]
rs13390099	1.00[AMR][1000 genomes]
rs13398378	1.00[YRI][hapmap]
rs13399683	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402307	1.00[AMR][1000 genomes]
rs13403113	1.00[YRI][hapmap]
rs13403212	1.00[AMR][1000 genomes]
rs13403271	1.00[YRI][hapmap]
rs13403500	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13409003	1.00[AMR][1000 genomes]
rs13414846	1.00[YRI][hapmap]
rs13419776	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13421441	1.00[AMR][1000 genomes]
rs13422227	1.00[AMR][1000 genomes]
rs13430813	1.00[AMR][1000 genomes]
rs2540934	1.00[MEX][hapmap]
rs28619876	1.00[AMR][1000 genomes]
rs41411646	1.00[MEX][hapmap]
rs59956837	0.89[AFR][1000 genomes]
rs61671144	1.00[AMR][1000 genomes]
rs6756381	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv873879	chr2:37200033-37299145	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv581471	chr2:37213186-37257386	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv581472	chr2:37235324-37291320	Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv1820206	chr2:37236821-37277811	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37195200-37252800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:37195400-37248600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:37209000-37290200	Weak transcription	Small Intestine	intestine
4	chr2:37214200-37248400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:37219200-37256400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:37221000-37307600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:37223400-37282600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:37223400-37300400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr2:37224000-37256000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:37224000-37270600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:37224600-37248200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:37226800-37256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:37228600-37267000	Weak transcription	Stomach Mucosa	stomach
14	chr2:37229800-37251200	Weak transcription	K562	blood
15	chr2:37230400-37248400	Weak transcription	Right Ventricle	heart
16	chr2:37230800-37248200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr2:37232600-37248200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:37232800-37248400	Weak transcription	Psoas Muscle	Psoas
19	chr2:37232800-37251000	Weak transcription	Brain Substantia Nigra	brain
20	chr2:37233000-37253000	Weak transcription	NHEK	skin
21	chr2:37235000-37248400	Weak transcription	Aorta	Aorta
22	chr2:37237600-37255400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:37238000-37248200	Strong transcription	Adipose Nuclei	Adipose
24	chr2:37238200-37255200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr2:37238400-37248400	Weak transcription	Right Atrium	heart
26	chr2:37238400-37260800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr2:37238800-37251800	Strong transcription	Placenta	Placenta
28	chr2:37239200-37248000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr2:37240200-37260800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:37240400-37254200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr2:37240400-37304800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr2:37240600-37249800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr2:37240600-37306000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr2:37240800-37281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr2:37240800-37306400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr2:37240800-37307000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:37241000-37272600	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr2:37241200-37248400	Weak transcription	Ovary	ovary
39	chr2:37241200-37253000	Weak transcription	Fetal Kidney	kidney
40	chr2:37241200-37253000	Weak transcription	HMEC	breast
41	chr2:37241200-37256600	Weak transcription	Gastric	stomach
42	chr2:37241200-37306000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr2:37241400-37299600	Strong transcription	Primary B cells from peripheral blood	blood
44	chr2:37242000-37287000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr2:37242200-37248200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr2:37242200-37250200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr2:37242200-37250800	Strong transcription	Fetal Intestine Large	intestine
48	chr2:37242200-37253200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr2:37242200-37265800	Strong transcription	Liver	Liver
50	chr2:37242200-37305800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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