Variant report

Variant	rs10203995
Chromosome Location	chr2:39165054-39165055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 4 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873884	chr2:39154463-39332093	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10203995	SOS1	Cis_1M	lymphoblastoid	RTeQTL
rs10203995	ATL2	cis	parietal	SCAN
rs10203995	THUMPD2	cis	cerebellum	SCAN
rs10203995	TMEM178	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39145800-39172800	Weak transcription	Lung	lung
3	chr2:39147000-39166600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:39150000-39186600	Weak transcription	Brain Anterior Caudate	brain
5	chr2:39150400-39184800	Weak transcription	Psoas Muscle	Psoas
6	chr2:39155800-39174800	Weak transcription	Fetal Lung	lung
7	chr2:39156800-39172800	Weak transcription	Adipose Nuclei	Adipose
8	chr2:39160400-39186600	Weak transcription	Pancreas	Pancrea
9	chr2:39161400-39172400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:39163200-39174000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:39163200-39176000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:39163800-39183600	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:39164600-39165600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:39164800-39165600	Strong transcription	Ovary	ovary
15	chr2:39164800-39170400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:39165000-39165200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:39165000-39165200	Enhancers	Osteobl	bone
18	chr2:39165000-39172200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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