Variant report

Variant	rs10204459
Chromosome Location	chr2:145756179-145756180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12993495	0.81[AMR][1000 genomes]
rs12996204	0.85[EUR][1000 genomes]
rs1528413	0.84[EUR][1000 genomes]
rs16855349	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1881411	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1898731	0.84[EUR][1000 genomes]
rs2243647	0.84[EUR][1000 genomes]
rs2246114	0.84[EUR][1000 genomes]
rs2246245	0.84[EUR][1000 genomes]
rs2249681	0.84[EUR][1000 genomes]
rs2249798	0.84[EUR][1000 genomes]
rs2249819	0.84[EUR][1000 genomes]
rs2250518	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2250546	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2579024	0.84[EUR][1000 genomes]
rs3901734	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145748600-145756800	Weak transcription	Dnd41	blood
2	chr2:145754200-145756600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:145754400-145756200	Weak transcription	HSMM	muscle
4	chr2:145754600-145756600	Weak transcription	NHDF-Ad	bronchial
5	chr2:145754600-145758000	Weak transcription	NH-A	brain
6	chr2:145754800-145756200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:145754800-145756600	Weak transcription	Osteobl	bone
8	chr2:145754800-145757800	Weak transcription	A549	lung
9	chr2:145754800-145759600	Weak transcription	Ovary	ovary
10	chr2:145754800-145763200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:145754800-145763600	Weak transcription	Aorta	Aorta
12	chr2:145755800-145756200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:145755800-145758400	Enhancers	Adipose Nuclei	Adipose
14	chr2:145756000-145758200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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