Variant report

Variant	rs10204809
Chromosome Location	chr2:20801279-20801280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20644797..20655251-chr2:20787626..20802274,53	MCF-7	breast:
2	chr2:20800159..20801745-chr2:20823636..20825294,2	K562	blood:
3	chr2:20785689..20787635-chr2:20799308..20801529,2	K562	blood:
4	chr2:20798546..20802204-chr2:20815122..20819483,4	MCF-7	breast:
5	chr2:20648478..20650764-chr2:20800436..20802695,3	MCF-7	breast:
6	chr2:20777789..20780759-chr2:20800338..20803588,3	K562	blood:
7	chr2:20777436..20779851-chr2:20800410..20803316,2	K562	blood:

Variant related genes	Relation type
ENSG00000118960	Chromatin interaction
ENSG00000269976	Chromatin interaction
ENSG00000228950	Chromatin interaction
ENSG00000143878	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10153731	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10190590	1.00[AMR][1000 genomes]
rs10204567	1.00[AMR][1000 genomes]
rs12328527	1.00[AMR][1000 genomes]
rs13406282	1.00[AMR][1000 genomes]
rs13418218	1.00[AMR][1000 genomes]
rs16987861	1.00[AMR][1000 genomes]
rs28666627	1.00[AMR][1000 genomes]
rs9808086	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833537	chr2:20630092-20826816	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv833548	chr2:20682073-20864078	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1012037	chr2:20770850-20824893	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv535598	chr2:20770850-20824893	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv581167	chr2:20791125-20827846	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20792800-20801800	Enhancers	HUVEC	blood vessel
2	chr2:20793800-20801400	Enhancers	Brain Angular Gyrus	brain
3	chr2:20795000-20801600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:20795000-20802000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:20796000-20802400	Weak transcription	NHEK	skin
6	chr2:20796200-20804200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:20796600-20804400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:20797000-20803800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:20797000-20810600	Weak transcription	Colonic Mucosa	Colon
10	chr2:20797600-20810600	Weak transcription	Fetal Kidney	kidney
11	chr2:20797800-20804000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr2:20797800-20804400	Weak transcription	Fetal Lung	lung
13	chr2:20797800-20804400	Weak transcription	NH-A	brain
14	chr2:20797800-20804400	Weak transcription	NHLF	lung
15	chr2:20797800-20810800	Weak transcription	Gastric	stomach
16	chr2:20798000-20802600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:20798200-20802400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr2:20798200-20804200	Weak transcription	Ovary	ovary
19	chr2:20799200-20804600	Weak transcription	Brain Germinal Matrix	brain
20	chr2:20799200-20809800	Weak transcription	Spleen	Spleen
21	chr2:20799400-20804600	Weak transcription	HMEC	breast
22	chr2:20799800-20804000	Weak transcription	Esophagus	oesophagus
23	chr2:20799800-20804000	Weak transcription	Psoas Muscle	Psoas
24	chr2:20799800-20804000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:20799800-20804200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:20799800-20804200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:20799800-20804400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:20799800-20804600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:20799800-20808600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:20800000-20801400	Enhancers	Brain Hippocampus Middle	brain
31	chr2:20800000-20803600	Weak transcription	Colon Smooth Muscle	Colon
32	chr2:20800000-20804000	Weak transcription	Fetal Muscle Leg	muscle
33	chr2:20800000-20804200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr2:20800000-20804200	Weak transcription	Fetal Brain Male	brain
35	chr2:20800000-20809200	Weak transcription	Aorta	Aorta
36	chr2:20800000-20809400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr2:20800200-20801400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr2:20800200-20801400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:20800200-20803800	Weak transcription	Right Atrium	heart
40	chr2:20800200-20804000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr2:20800200-20804200	Weak transcription	Right Ventricle	heart
42	chr2:20800200-20808400	Weak transcription	Fetal Intestine Large	intestine
43	chr2:20800400-20802600	Weak transcription	NHDF-Ad	bronchial
44	chr2:20800400-20802800	Weak transcription	HSMM	muscle
45	chr2:20800400-20803600	Weak transcription	Left Ventricle	heart
46	chr2:20800400-20803800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr2:20800400-20804000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr2:20800400-20804000	Weak transcription	Lung	lung
49	chr2:20800400-20804400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr2:20800400-20804800	Weak transcription	Placenta	Placenta

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