Variant report

Variant	rs10204844
Chromosome Location	chr2:111502682-111502683
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:111498014..111500749-chr2:111501269..111504012,2	MCF-7	breast:
2	chr2:111466813..111469062-chr2:111500379..111503233,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10197162	1.00[ASW][hapmap]
rs11894642	0.86[ASW][hapmap]
rs13404825	1.00[ASW][hapmap]
rs13412431	0.88[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874839	chr2:111400934-111868010	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008758	chr2:111415136-111626467	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv535890	chr2:111415136-111626467	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv997829	chr2:111486961-111780537	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111499000-111503200	Enhancers	GM12878-XiMat	blood
2	chr2:111499800-111503400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:111499800-111503800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:111499800-111504200	Weak transcription	Fetal Heart	heart
5	chr2:111500000-111503400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:111500200-111505600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:111500600-111504400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:111501200-111504200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:111501600-111504000	Enhancers	Dnd41	blood
10	chr2:111501800-111510400	Weak transcription	Right Atrium	heart
11	chr2:111502000-111503000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:111502000-111503000	Enhancers	HMEC	breast
13	chr2:111502000-111503400	Enhancers	K562	blood
14	chr2:111502000-111506600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:111502200-111506000	Weak transcription	Brain Anterior Caudate	brain
16	chr2:111502400-111502800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:111502400-111503000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:111502400-111503000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:111502400-111503000	Bivalent Enhancer	NHEK	skin
20	chr2:111502400-111503400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr2:111502400-111503600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:111502400-111506400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:111502600-111503000	Enhancers	Lung	lung
24	chr2:111502600-111503200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr2:111502600-111504000	Bivalent Enhancer	Fetal Thymus	thymus
26	chr2:111502600-111504200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr2:111502600-111506600	Enhancers	H1 Cell Line	embryonic stem cell

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