Variant report

Variant	rs10204982
Chromosome Location	chr2:40907135-40907136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1003616	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1003617	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10201594	0.90[ASN][1000 genomes]
rs10206098	0.90[ASN][1000 genomes]
rs10209336	0.87[ASN][1000 genomes]
rs10211572	0.83[ASN][1000 genomes]
rs10445883	0.85[ASN][1000 genomes]
rs10490262	0.83[ASN][1000 genomes]
rs10490263	0.85[JPT][hapmap];0.91[YRI][hapmap]
rs1107932	0.84[EUR][1000 genomes]
rs11124752	0.83[ASN][1000 genomes]
rs11124757	0.83[ASN][1000 genomes]
rs11124759	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11682329	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11682367	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11885458	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11891229	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11891709	0.91[ASN][1000 genomes]
rs12105490	0.82[EUR][1000 genomes]
rs12466428	0.84[EUR][1000 genomes]
rs12466571	0.81[EUR][1000 genomes]
rs12469284	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12469295	0.84[EUR][1000 genomes]
rs12469493	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12474038	0.96[ASN][1000 genomes]
rs12474457	0.88[EUR][1000 genomes]
rs12474560	0.88[EUR][1000 genomes]
rs12477533	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615804	0.81[ASN][1000 genomes]
rs12712699	0.82[ASN][1000 genomes]
rs12712700	0.88[ASN][1000 genomes]
rs12712708	0.80[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap]
rs12986905	0.90[ASN][1000 genomes]
rs13004542	0.87[ASN][1000 genomes]
rs13016866	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs13022083	0.89[ASN][1000 genomes]
rs13023675	0.82[ASN][1000 genomes]
rs13023757	0.84[ASN][1000 genomes]
rs13031824	0.83[ASN][1000 genomes]
rs13414829	0.81[EUR][1000 genomes]
rs173800	0.86[ASN][1000 genomes]
rs1861303	0.84[EUR][1000 genomes]
rs1861305	0.83[ASN][1000 genomes]
rs1861306	0.81[ASN][1000 genomes]
rs2024436	0.83[ASN][1000 genomes]
rs2024437	0.87[CHB][hapmap]
rs2075195	0.83[ASN][1000 genomes]
rs2080341	0.81[ASN][1000 genomes]
rs2110791	0.80[EUR][1000 genomes]
rs2192816	0.81[EUR][1000 genomes]
rs2192819	0.83[EUR][1000 genomes]
rs2192820	0.84[EUR][1000 genomes]
rs2216044	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2373933	0.85[AMR][1000 genomes]
rs2888698	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34359856	0.88[EUR][1000 genomes]
rs36081778	0.83[ASN][1000 genomes]
rs3851317	0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3862989	0.81[EUR][1000 genomes]
rs4101520	0.84[ASN][1000 genomes]
rs42786	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs42789	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs42794	0.82[JPT][hapmap]
rs4383382	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4384832	0.81[EUR][1000 genomes]
rs4387847	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4528809	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4552230	0.80[ASN][1000 genomes]
rs4952640	0.88[EUR][1000 genomes]
rs53534	0.85[ASN][1000 genomes]
rs55690670	0.87[EUR][1000 genomes]
rs55772101	0.88[EUR][1000 genomes]
rs55878022	0.89[EUR][1000 genomes]
rs56121667	0.88[EUR][1000 genomes]
rs56336113	0.88[EUR][1000 genomes]
rs57625048	0.87[EUR][1000 genomes]
rs57950795	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60819615	0.81[EUR][1000 genomes]
rs62139487	0.89[EUR][1000 genomes]
rs62139540	0.83[EUR][1000 genomes]
rs62139543	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62139545	0.81[EUR][1000 genomes]
rs62139546	0.81[EUR][1000 genomes]
rs62141367	0.81[EUR][1000 genomes]
rs62141372	0.80[EUR][1000 genomes]
rs6544350	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6708921	0.80[EUR][1000 genomes]
rs6710038	0.90[ASN][1000 genomes]
rs6712874	0.81[EUR][1000 genomes]
rs6713004	0.87[ASN][1000 genomes]
rs6720960	0.88[EUR][1000 genomes]
rs6733936	0.80[EUR][1000 genomes]
rs6734048	0.80[EUR][1000 genomes]
rs67918843	0.88[ASN][1000 genomes]
rs68168524	0.88[ASN][1000 genomes]
rs74177099	0.88[ASN][1000 genomes]
rs7557413	0.88[ASN][1000 genomes]
rs7562117	0.81[EUR][1000 genomes]
rs7584710	0.89[EUR][1000 genomes]
rs7589309	0.85[ASN][1000 genomes]
rs767636	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs881189	0.83[EUR][1000 genomes]
rs918013	0.83[ASN][1000 genomes]
rs9309057	0.81[ASN][1000 genomes]
rs9309058	0.82[ASN][1000 genomes]
rs9808252	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv873917	chr2:40710953-41015998	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv528865	chr2:40805427-41218810	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv873924	chr2:40835285-40926138	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv873925	chr2:40835285-40966719	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv873926	chr2:40835285-40986860	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv873927	chr2:40835285-41034225	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv470455	chr2:40835285-41059164	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv873928	chr2:40835285-41075134	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv873929	chr2:40835285-41180690	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv873931	chr2:40869165-40966719	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv873932	chr2:40880043-40912597	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv456441	chr2:40882402-41064824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv581514	chr2:40882402-41064824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv456452	chr2:40890416-40989061	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv581515	chr2:40890416-40989061	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40902600-40907200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:40905400-40917200	Weak transcription	Aorta	Aorta
3	chr2:40906200-40907600	Enhancers	Dnd41	blood
4	chr2:40906600-40907200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:40906800-40907200	Enhancers	Adipose Nuclei	Adipose
6	chr2:40906800-40907200	Enhancers	Colon Smooth Muscle	Colon
7	chr2:40906800-40907400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr2:40907000-40907200	Enhancers	Ovary	ovary
9	chr2:40907000-40907200	Flanking Active TSS	Rectal Smooth Muscle	rectum
10	chr2:40907000-40907200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr2:40907000-40907200	Enhancers	NHDF-Ad	bronchial
12	chr2:40907000-40907400	Enhancers	Small Intestine	intestine
13	chr2:40907000-40907400	Flanking Active TSS	Osteobl	bone
14	chr2:40907000-40907600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:40907000-40908000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr2:40907000-40908000	Active TSS	NHLF	lung
17	chr2:40907000-40908200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:40907000-40908200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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