Variant report

Variant	rs10206036
Chromosome Location	chr2:190376873-190376874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10206543	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11692009	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12474223	0.89[AFR][1000 genomes]
rs1371468	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs16831659	1.00[JPT][hapmap]
rs2043933	1.00[JPT][hapmap]
rs4417750	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4461290	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508634	0.89[AFR][1000 genomes]
rs744653	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751663	0.88[AFR][1000 genomes]
rs751664	0.92[AFR][1000 genomes]
rs7596205	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190366000-190377600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:190367000-190378400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:190371400-190378600	Weak transcription	Psoas Muscle	Psoas
4	chr2:190371600-190378000	Weak transcription	Ovary	ovary
5	chr2:190375600-190380600	Weak transcription	Stomach Mucosa	stomach
6	chr2:190376000-190386000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:190376200-190377000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:190376400-190378400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr2:190376400-190382000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:190376600-190377600	Weak transcription	Adipose Nuclei	Adipose
11	chr2:190376600-190384800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:190376800-190379000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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