Variant report

Variant	rs10206544
Chromosome Location	chr2:133990792-133990793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10167342	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10170384	0.83[AMR][1000 genomes]
rs10182118	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10185165	0.83[AMR][1000 genomes]
rs10193871	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10210486	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10496702	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12464930	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13390487	0.87[EUR][1000 genomes]
rs13413333	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13418981	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13430905	0.85[EUR][1000 genomes]
rs13431418	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1430169	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17800749	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1820927	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1835341	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2115865	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2217428	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4057049	0.87[EUR][1000 genomes]
rs62178459	0.93[EUR][1000 genomes]
rs62179960	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62179961	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62179967	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62179969	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62179970	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6430405	0.92[EUR][1000 genomes]
rs6744863	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6756852	0.99[EUR][1000 genomes]
rs7600407	0.92[EUR][1000 genomes]
rs7600871	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7603759	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949629	chr2:133830379-134014961	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1001601	chr2:133838626-134005959	Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv997821	chr2:133868822-134360220	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv535927	chr2:133868822-134360220	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1002488	chr2:133890159-134275312	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv535928	chr2:133890159-134275312	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv1011100	chr2:133900062-134046163	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	esv3375790	chr2:133906915-134222833	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv1005405	chr2:133930876-134055434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv535929	chr2:133930876-134055434	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:133970800-133992800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:133988400-133991400	Enhancers	HUVEC	blood vessel
3	chr2:133988600-133990800	Enhancers	Brain Anterior Caudate	brain
4	chr2:133988800-133991000	Enhancers	Brain Hippocampus Middle	brain
5	chr2:133988800-133991600	Enhancers	Brain Substantia Nigra	brain
6	chr2:133989200-133991200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:133989400-133990800	Weak transcription	Brain Angular Gyrus	brain
8	chr2:133989800-133991000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:133989800-133993000	Weak transcription	NHLF	lung
10	chr2:133989800-133998000	Weak transcription	Ovary	ovary
11	chr2:133990000-133990800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:133990000-133990800	Enhancers	Brain Cingulate Gyrus	brain
13	chr2:133990200-133991000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links