Variant report

Variant	rs10207325
Chromosome Location	chr2:10357818-10357819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10356862..10358929-chr2:10359866..10361666,2	K562	blood:
2	chr2:10347041..10349707-chr2:10357445..10360186,3	K562	blood:
3	chr2:10357604..10359556-chr2:10380335..10382932,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1006866	0.87[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10171793	0.95[CEU][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11674154	0.91[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11676328	1.00[ASN][1000 genomes]
rs11689905	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12692400	0.93[ASN][1000 genomes]
rs13384598	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13396180	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16855984	0.86[CEU][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2357470	0.88[ASN][1000 genomes]
rs35362301	1.00[ASN][1000 genomes]
rs4669558	0.87[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs56972249	0.89[ASN][1000 genomes]
rs60724710	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60785900	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432076	0.81[ASN][1000 genomes]
rs6432078	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6713481	0.91[CEU][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6716758	0.90[ASN][1000 genomes]
rs6752801	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6757762	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs6761159	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7591168	0.99[ASN][1000 genomes]
rs7598088	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7601274	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7601376	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs887964	0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs887965	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv818977	chr2:10333767-10393038	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv34981	chr2:10341468-10384302	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv35171	chr2:10341468-10384302	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2756904	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv2759024	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv873637	chr2:10349858-10381434	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv962058	chr2:10350771-10376962	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv873638	chr2:10351852-10381434	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10339400-10362000	Weak transcription	Fetal Intestine Small	intestine
2	chr2:10343600-10360400	Weak transcription	HSMM	muscle
3	chr2:10349800-10359400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:10349800-10362400	Weak transcription	Spleen	Spleen
5	chr2:10350400-10375200	Weak transcription	Right Atrium	heart
6	chr2:10355000-10358200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:10356000-10358000	Enhancers	Fetal Brain Male	brain
8	chr2:10356200-10358000	Bivalent Enhancer	HepG2	liver
9	chr2:10356200-10358600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:10356400-10358400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:10356400-10358800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:10357000-10358600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:10357200-10358200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr2:10357200-10360400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:10357200-10362400	Weak transcription	K562	blood
16	chr2:10357400-10358200	Bivalent Enhancer	Fetal Stomach	stomach
17	chr2:10357400-10358400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:10357400-10361400	Weak transcription	A549	lung
19	chr2:10357600-10358000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr2:10357600-10358200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr2:10357600-10360200	Weak transcription	Fetal Brain Female	brain
22	chr2:10357600-10360400	Weak transcription	Osteobl	bone
23	chr2:10357600-10361200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr2:10357800-10359800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:10357800-10360200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:10357800-10360800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:10357800-10362400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:10357800-10368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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