Variant report

Variant	rs10209652
Chromosome Location	chr2:233557925-233557926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10185281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10201344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10205567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10208298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10221688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13382726	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13391541	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13398944	0.83[AMR][1000 genomes]
rs13399533	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13409355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13414498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13420824	1.00[AMR][1000 genomes]
rs13421393	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13430365	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28550401	0.83[AMR][1000 genomes]
rs28570372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233538200-233561400	Weak transcription	Right Ventricle	heart
2	chr2:233546800-233561400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:233547400-233560600	Weak transcription	Placenta	Placenta
4	chr2:233547400-233561200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:233547800-233561400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:233548600-233561600	Weak transcription	Aorta	Aorta
7	chr2:233549200-233561200	Weak transcription	Brain Substantia Nigra	brain
8	chr2:233553000-233561200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:233554600-233561400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:233554800-233561200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:233555000-233561400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links