Variant report

Variant	rs10210162
Chromosome Location	chr2:86560526-86560527
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86554507..86558394-chr2:86560101..86562746,3	K562	blood:
2	chr2:86558503..86561277-chr2:86568134..86571104,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10210905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs11675985	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11682376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11695402	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11891758	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11892910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13404016	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1863054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1863064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1863065	0.88[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs2113616	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs2161896	0.87[ASN][1000 genomes]
rs2367231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3821016	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4832034	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4832259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4832266	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4832275	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57771960	0.90[ASN][1000 genomes]
rs6718596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6728519	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6730604	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6734695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6756213	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7565645	1.00[CEU][hapmap]
rs7576102	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs7606188	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10210162	MRPL35	cis	multi-tissue	Pritchard
rs10210162	C2orf23	cis	multi-tissue	Pritchard

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86533200-86563000	Weak transcription	Brain Germinal Matrix	brain
2	chr2:86537600-86563000	Weak transcription	Brain Anterior Caudate	brain
3	chr2:86549200-86563000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:86552200-86563800	Weak transcription	Aorta	Aorta
5	chr2:86555400-86563200	Weak transcription	Spleen	Spleen
6	chr2:86556800-86561200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr2:86557600-86561000	Weak transcription	Left Ventricle	heart
8	chr2:86558400-86560800	Enhancers	Fetal Heart	heart
9	chr2:86558600-86562200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr2:86558600-86563000	Weak transcription	Pancreas	Pancrea
11	chr2:86559000-86561000	Enhancers	Fetal Stomach	stomach
12	chr2:86559000-86561000	Enhancers	Rectal Smooth Muscle	rectum
13	chr2:86559200-86563000	Enhancers	Fetal Brain Male	brain
14	chr2:86559400-86561000	Enhancers	Fetal Muscle Leg	muscle
15	chr2:86559400-86562600	Enhancers	Stomach Smooth Muscle	stomach
16	chr2:86559600-86563000	Enhancers	Colon Smooth Muscle	Colon
17	chr2:86559800-86561400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:86559800-86561800	Weak transcription	Fetal Intestine Large	intestine
19	chr2:86559800-86563000	Weak transcription	Fetal Intestine Small	intestine
20	chr2:86560200-86561000	Weak transcription	Placenta	Placenta
21	chr2:86560200-86562400	Enhancers	Fetal Brain Female	brain
22	chr2:86560200-86563000	Weak transcription	Psoas Muscle	Psoas
23	chr2:86560200-86563000	Weak transcription	Right Atrium	heart
24	chr2:86560200-86563000	Weak transcription	Right Ventricle	heart
25	chr2:86560200-86563000	Weak transcription	HSMMtube	muscle
26	chr2:86560400-86560600	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links