Variant report

Variant	rs10210479
Chromosome Location	chr2:56487589-56487590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1160647	0.82[JPT][hapmap]
rs13026932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1990757	1.00[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs214047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2193473	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2193474	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs2193476	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2216323	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2869527	0.91[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2869528	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4672100	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6545558	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6545559	0.82[JPT][hapmap]
rs6719608	0.92[CEU][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs979504	1.00[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs994297	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56486600-56487800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr2:56486600-56505000	Weak transcription	Left Ventricle	heart
3	chr2:56486800-56488000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr2:56487200-56488000	Enhancers	HSMMtube	muscle
5	chr2:56487400-56487800	Enhancers	Psoas Muscle	Psoas
6	chr2:56487400-56487800	Weak transcription	HSMM	muscle
7	chr2:56487400-56488000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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