Variant report

Variant	rs10210579
Chromosome Location	chr2:128213934-128213935
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128208346..128210389-chr2:128213324..128215970,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PROC-4	chr2:128213742-128213941	NONHSAT074160

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13431184	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57539465	0.83[AMR][1000 genomes]
rs61354588	0.83[AMR][1000 genomes]
rs6708162	1.00[AMR][1000 genomes]
rs6753174	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv524607	chr2:128196424-128218364	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128204800-128225600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:128205400-128223600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:128205400-128223800	Weak transcription	Placenta	Placenta
4	chr2:128205800-128223600	Weak transcription	Thymus	Thymus
5	chr2:128205800-128223800	Weak transcription	Lung	lung
6	chr2:128206000-128224000	Weak transcription	Psoas Muscle	Psoas
7	chr2:128206200-128237800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:128206800-128216600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:128206800-128233600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:128207000-128221000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:128208400-128238800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:128208800-128226000	Weak transcription	Brain Anterior Caudate	brain
13	chr2:128209000-128238000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr2:128209200-128221000	Weak transcription	Fetal Stomach	stomach
15	chr2:128209200-128223600	Weak transcription	Primary B cells from cord blood	blood
16	chr2:128209200-128223600	Weak transcription	Aorta	Aorta
17	chr2:128209200-128225400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr2:128209200-128237600	Weak transcription	Adipose Nuclei	Adipose
19	chr2:128209400-128223600	Weak transcription	Spleen	Spleen
20	chr2:128209600-128214400	Weak transcription	HSMMtube	muscle
21	chr2:128210000-128221800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:128210000-128223600	Weak transcription	Brain Substantia Nigra	brain
23	chr2:128210000-128226400	Weak transcription	Esophagus	oesophagus
24	chr2:128210000-128227200	Weak transcription	Left Ventricle	heart
25	chr2:128210000-128237600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr2:128210200-128238000	Weak transcription	Colon Smooth Muscle	Colon
27	chr2:128210400-128222200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr2:128210600-128215400	Strong transcription	Primary T cells from cord blood	blood
29	chr2:128210600-128225200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr2:128210800-128214000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr2:128210800-128214000	Flanking Active TSS	HepG2	liver
32	chr2:128211200-128215000	Enhancers	Fetal Intestine Large	intestine
33	chr2:128211200-128225400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr2:128211200-128225600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr2:128211400-128214400	Enhancers	Fetal Intestine Small	intestine
36	chr2:128211400-128222000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr2:128211400-128226600	Weak transcription	Ovary	ovary
38	chr2:128211600-128222000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr2:128211600-128226800	Weak transcription	Brain Angular Gyrus	brain
40	chr2:128211600-128227000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr2:128211600-128237600	Weak transcription	Right Ventricle	heart
42	chr2:128211800-128223600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr2:128212200-128226800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr2:128212400-128214000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr2:128212800-128214000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr2:128212800-128214200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr2:128212800-128214600	Flanking Active TSS	Liver	Liver
48	chr2:128212800-128215000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr2:128212800-128215400	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr2:128213000-128221200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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